Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0657 |
Symbol | astD |
ID | 6114891 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 910548 |
End bp | 912008 |
Gene Length | 1461 bp |
Protein Length | 486 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641632143 |
Product | succinylglutamic semialdehyde dehydrogenase |
Protein accession | YP_001759048 |
Protein GI | 170725022 |
COG category | [C] Energy production and conversion |
COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
TIGRFAM ID | [TIGR03240] succinylglutamic semialdehyde dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00563166 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00000657572 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACTCAAT TTATTAATGG TCAGTGGGTT GCTGGCCTAG GTCACGAAGT GACATCTAAA AACCCAGCAA ACAGTGAAGT TATCTGGAGC AGTAAAACAG CTACCGCTGA ACAGGTTAAT ACCGCCGTTG AAGCTGCACG TGAAGTACAG TTTGACTGGT TTATGCTGGG CTTTGAAGGT CGTTTGGCTA TCGTTGAAGC TTATAAAACT CAGCTTGAAG AGCATAAAGC AGAGATGGCG GAAGTGATCG CTCAAGAAAC CGGTAAGCCG CAGTGGGAAA CCGCCACTGA AGCTGGCGCC ATGATAGGCA AAATTGGTCT TTCTGTTGCT GCTTACAATA AGCGTACTGG CAGCTCTGAA AACGATACAC CAGCTGGACG TGCTGTATTG CGTCATAAGC CCCATGGTGT GGTGGCTGTG TTTGGCCCTT ATAACTTCCC AGGTCATTTA CCAAATGGTC ATATTGTTCC TGCTCTGCTT GCGGGTAACA CTGTGGTTTT CAAACCATCG GAATTGACAC CTAAAGTGGC TGAGCTGATG CTTAAGCTTT GGGAGAAAGC GGGACTGCCT GCTGGTGTGA TTAACTTGGT TCAAGGTGAA GTGGAGACAG GTAAAGCCCT AGCTTCACAT GAGCAGATCG ATGGTCTGTT CTTTACTGGA AGTTCTCGTA CTGGCCATAT TTTGCATCAG CAGTATGCTG GTGAACCAGG TAAGATTTTA GCTTTAGAGA TGGGTGGTAA TAACCCACTT ATCATCAAAG GTGTAAAAGA CACCAAAGCT GCAGTCCATG ACATCATTCA GTCGGCTTAT ATCTCATCTG GTCAACGTTG TACTTGTGCT CGTCGTCTCT ATGTTGAGAA GGGCGCAGAG GGCGATGCAC TACTTGCAGA GCTTGCCGAT GCGGTTAAGC GCATTCAAGT TGGTGCTTGG AACAGCCAGC CACAACCGTT TATGGGCTCT ATGATCTCAG AAACAGCTGC TAAAGGCATG GTTGAGTCTC AGCGTAACTT GCTGAACCTA GGTGGTAGCT CACTGGTTGA ATTAACACAT TTAAAAGAGG GCACTGGGCT AGTTTCACCT GGTCTTATTG ATGTGACTCA AGTGATTGAG CTGCCTGATG AGGAGTACTT CGGTCCTCTG CTTCAAGTGG TGCGTTATAC CGATTTTGAT GAAGCGATTA AGCTGGCGAA CAAGACTCGT TATGGCCTAT CAGCTGGTAT TCTTGCTGAT AGCCGTGATG ACTACGAGTA CTTCCTAGCG CGTATTCGCG CGGGCATTGT TAACTGGAAT AAGCAGATCA CAGGCGCATC TGGTGCAGCT CCATTTGGTG GTGTTGGCGC ATCGGGTAAC CACAGAGCGA GCGCATTTTA TGCTGCTGAT TACTGTGCAT ACCCAGTTGC TTCTGTTGAA GCTGATGCGG TAAGCCTGCC TGCGAGTCTG AGTCCAGGTT TAAGTATTTA A
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Protein sequence | MTQFINGQWV AGLGHEVTSK NPANSEVIWS SKTATAEQVN TAVEAAREVQ FDWFMLGFEG RLAIVEAYKT QLEEHKAEMA EVIAQETGKP QWETATEAGA MIGKIGLSVA AYNKRTGSSE NDTPAGRAVL RHKPHGVVAV FGPYNFPGHL PNGHIVPALL AGNTVVFKPS ELTPKVAELM LKLWEKAGLP AGVINLVQGE VETGKALASH EQIDGLFFTG SSRTGHILHQ QYAGEPGKIL ALEMGGNNPL IIKGVKDTKA AVHDIIQSAY ISSGQRCTCA RRLYVEKGAE GDALLAELAD AVKRIQVGAW NSQPQPFMGS MISETAAKGM VESQRNLLNL GGSSLVELTH LKEGTGLVSP GLIDVTQVIE LPDEEYFGPL LQVVRYTDFD EAIKLANKTR YGLSAGILAD SRDDYEYFLA RIRAGIVNWN KQITGASGAA PFGGVGASGN HRASAFYAAD YCAYPVASVE ADAVSLPASL SPGLSI
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