Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0505 |
Symbol | |
ID | 6114739 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 717939 |
End bp | 718907 |
Gene Length | 969 bp |
Protein Length | 322 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641631992 |
Product | NifR3 family TIM-barrel protein |
Protein accession | YP_001758897 |
Protein GI | 170724871 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0042] tRNA-dihydrouridine synthase |
TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000101066 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0204748 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGATTG GACCCTATCA ACTGAAAAAT CAGCTGATCG TGGCACCAAT GGCAGGTGTC ACAGACCAAG CCTTTAGAAA CCTTTGTCTT CGATATGGCG CTGCCATGGC GGTGTCAGAG ATGCTTTCAT CTAACCCCGA TGTTTGGGAT ACAGATAAAA GCCGCCAGCG GATGCTTCAT GCTGGTGAAG ATGGGATACG ATCAGTACAA ATTGCAGGTG CAGATCCAGA ATTGATGGCC AACGCCGCCG TTGTCAACGT ACAACAAGGG GCGCAGATCA TCGATATCAA TATGGGTTGT CCTGCAAAGA AAGTGAATAG AAAGCTAGCG GGTTCAGCAC TACTACAAGA CCCAGTGCAG GTAAAAGCAA TTTTACAAGC CGTGGTCGCT GCAGTTGATG TCCCCGTGAC ACTGAAAATT CGAACTGGAT GGGCCCCGGA GCACAGGAAC GGTGTTCAAA TCGCCCAGAT AGCCGAAGAT TGTGGTATCG CCGCGTTAGC CGTACATGGC CGAACTCGGC AGTGCATGTA TAAAGGTAAT GCTGAATACG ACACGATTAA AGCTATTAAA AAGAATGTCT CGATCCCTGT TGTAGCGAAC GGAGACATCA CCACCCCGCA GAAGGCGCAA TTTGTGCTTG AACATACGGG AGTTGATGCT CTTATGATAG GTCGAGGTGC CCAAGGAAGG CCTTGGATTT TCCGAGAGAT CCAACATTAC CTGGAAACGG GTAACATGCT AGCGCCTGTA GAGGTGGATG AAAAGCGTCA AGTGATGCTG GAACACCTTA AAAACTTATA CTCACTTTAC GGTGAATATA AGGGGATCCG TTTCGCTAGA AAGCATGTTG GATGGTATTT GGACCAAGAT GAACAGCGTC CATTCCGCGC CGAATTTAAT CGGCTGGAAA CTGTTGAAGA ACAAGGTTCC ATGGTGGAAC GCTATTTTGA CGAAATTGCA CAGAATTAA
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Protein sequence | MQIGPYQLKN QLIVAPMAGV TDQAFRNLCL RYGAAMAVSE MLSSNPDVWD TDKSRQRMLH AGEDGIRSVQ IAGADPELMA NAAVVNVQQG AQIIDINMGC PAKKVNRKLA GSALLQDPVQ VKAILQAVVA AVDVPVTLKI RTGWAPEHRN GVQIAQIAED CGIAALAVHG RTRQCMYKGN AEYDTIKAIK KNVSIPVVAN GDITTPQKAQ FVLEHTGVDA LMIGRGAQGR PWIFREIQHY LETGNMLAPV EVDEKRQVML EHLKNLYSLY GEYKGIRFAR KHVGWYLDQD EQRPFRAEFN RLETVEEQGS MVERYFDEIA QN
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