Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0483 |
Symbol | hemC |
ID | 6114717 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 669905 |
End bp | 670834 |
Gene Length | 930 bp |
Protein Length | 309 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641631971 |
Product | porphobilinogen deaminase |
Protein accession | YP_001758876 |
Protein GI | 170724850 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0181] Porphobilinogen deaminase |
TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCCAAA ACGTCATTCG TATCGCTACA CGTAAAAGCC CGCTTGCACT ATGGCAAGCT GAATTTGTAA AAGCTGAACT TGAAAAGTTT CACCCAGATC TCACGGTAGA ACTTCTGCCT ATGAGCACTA AAGGTGACAT TATCCTTGAT ACACCTTTAG CAAAAGTTGG TGGTAAAGGT CTGTTTGTTA AAGAGTTAGA AGTTGCAATG CTTGAAAATA GAGCCGATAT TGCCGTTCAC TCTATGAAAG ATGTACCAGT AGATTTCCCT GAAGGTCTTG GTCTAGAGAT CATCTGTGAG CGTGAAGATC CTCGTGATGC ATTCGTCTCT AACAACTACA AGAGCATCAG TGAGCTTCCA AAAGGTGCTG TTGTTGGTAC ATCTAGCCTA CGTCGTCAAT GCCAAATCAG AGCAGCGCGT CCAGACCTTC AGATCCGCGA TCTACGCGGA AACGTGGGGA CTCGTTTAGG TAAACTAGAT GCTGGAACCT ATGATGCCAT CATTCTAGCA GCTGCAGGTC TTAAAAGACT TAAGCTCGAA GAGCGCATCA CTAGCTTTAT TTCAGCTGAA GAGTCGCTGC CAGCGAATGG TCAAGGTGCT GTTGGTATTG AGTGCCGCAC AGATGATGAG CGTGTAAAAG CGCTATTAGC ACCCCTTGAG CATGCAGAAA CACGTTTTCG CGTGATCGCA GAGCGCGCCA TGAATACGCA CCTTGAAGGT GGTTGCCAGG TTCCAATTGG AGCCTACGCA GAGATAGTTG ATGATACGCT AACCCTTCGC GGTTTGGTCG GTAACCCAGA TGGTACTCAG ATCATTGCAT CAACCAAAGT AGGGCCTAAA ACCGATGCAA AAGCATTGGG GATCTCCCTT GCCGAAGAGC TCTTAAGCAA AGGTGCTAAA ACCATTCTCG ATGCTGTTTA CATTAAGTAG
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Protein sequence | MSQNVIRIAT RKSPLALWQA EFVKAELEKF HPDLTVELLP MSTKGDIILD TPLAKVGGKG LFVKELEVAM LENRADIAVH SMKDVPVDFP EGLGLEIICE REDPRDAFVS NNYKSISELP KGAVVGTSSL RRQCQIRAAR PDLQIRDLRG NVGTRLGKLD AGTYDAIILA AAGLKRLKLE ERITSFISAE ESLPANGQGA VGIECRTDDE RVKALLAPLE HAETRFRVIA ERAMNTHLEG GCQVPIGAYA EIVDDTLTLR GLVGNPDGTQ IIASTKVGPK TDAKALGISL AEELLSKGAK TILDAVYIK
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