Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0475 |
Symbol | |
ID | 6114709 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 593710 |
End bp | 595092 |
Gene Length | 1383 bp |
Protein Length | 460 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641631963 |
Product | HlyD family type I secretion membrane fusion protein |
Protein accession | YP_001758868 |
Protein GI | 170724842 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.205035 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGTAAAA AACTAACCAC TCATGATCTT GAGATGATCG ATGATGTTTA TGGTGCCATG ATGACAGATG CACCAAGCAG TCATAGGTTA ATCATCTGGA CACTAGTGGC TTTAGCCACA TGCTTTTTAA TTTGGGCTTT TTTTGCAGAA CTTGACCAAG TAACAACTGG CATGGGGAAA GTGATCCCCT CATCTCAAGT CCAGATAATT CAAAGCCTGG ATGGCGGCAT CATGCAGGAG CTATATGTTC AGGAAGGGAT GATAGTTACT AAAGGGCAAG CCTTAGTTCG TATTGACGAT ACTCGCTTTC GTTCCGACTT TGCTCAGCAA GAGCAAGAGG TCTATAGCCT ACAAGCCAAC GTAAAACGGT TAGAGACAGA GTTAAATAGT ATTGTCATCA CCGATATGGC AGCTGATTGG CGCGAACAAG TAAGGATCAC TAAGTTACCA CTGCAGTTTT CTGCAGAGTT AGCAGAGTTG GAGCCTGAGC TAATCGAACG TCAAAAAGAT GAATACTCAG GCCGATTAGA CAGCCTAAGC AATCAGTTAG AGATCTTAGC CAGACAGATA CAGCAAAGGC AGCAAGAGAC ACAAGAGTTA GCTTCAAAAA TACGTACTCT AACCAAAAGT TACCAATTAG TCTCTCGAGA GCTGTCGCTA ACAAGGCCTC TGGCGGATAA AGGCATTGTG CCTGAAGTTG AACTGCTAAA ACTCGAACGT ACGGTAAATG ACATACAAGG TGAGTTAGCC ACCCTAAGGC TTCTGCGTCC TAAGGTAAAA GCCTCTCAAG ATGAAGCTAT TTTAAAGCGA CGCGAAGCAG TATTTGCCTT TTCAACTGAA ACGCGAACTC AACTGAGCGA TCTACAAACT AAACTATCAC GCATGAGCGA AGCGCAGGTT GGTGCTCAAG ATAAAGTGAA TAAGGCGGAG ATTGTATCGC CAGTAAACGG GACAATAAAA AGCATTTATA TCAATACATT GGGTGGGGTT GTTCAACCTG GCATTGATAT TTTAGAAATT GTTCCGTCAG AAGACCAACT GCTTATTGAA ACTAAGATAA CACCTAAAGA TATTGCGTTT TTACACCCTG GTCTTCCAGC CGTAGTCAAA GTCACAGCAT ATGACTTTAC TCGCTACGGA GGGTTGAACG GGACTGTGGA GCACATAAGT GCTGACACAT CACAAGATGA GGAGGGGAAC AGCTTCTATC TTGTCAAGGT TCGTACTGAA CTTTCAAGCT TAACAAGGGA CGATGGCACA GAGATGCCGA TAATACCAGG GATGTTGACT TCAGTTGATG TTATTACTGG GCAGAGATCC ATTCTAGAGT ACATACTTAA TCCAATTTTA AGGGCAAAAG ATACAGCGCT CCGAGAGCGT TAA
|
Protein sequence | MSKKLTTHDL EMIDDVYGAM MTDAPSSHRL IIWTLVALAT CFLIWAFFAE LDQVTTGMGK VIPSSQVQII QSLDGGIMQE LYVQEGMIVT KGQALVRIDD TRFRSDFAQQ EQEVYSLQAN VKRLETELNS IVITDMAADW REQVRITKLP LQFSAELAEL EPELIERQKD EYSGRLDSLS NQLEILARQI QQRQQETQEL ASKIRTLTKS YQLVSRELSL TRPLADKGIV PEVELLKLER TVNDIQGELA TLRLLRPKVK ASQDEAILKR REAVFAFSTE TRTQLSDLQT KLSRMSEAQV GAQDKVNKAE IVSPVNGTIK SIYINTLGGV VQPGIDILEI VPSEDQLLIE TKITPKDIAF LHPGLPAVVK VTAYDFTRYG GLNGTVEHIS ADTSQDEEGN SFYLVKVRTE LSSLTRDDGT EMPIIPGMLT SVDVITGQRS ILEYILNPIL RAKDTALRER
|
| |