Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0312 |
Symbol | |
ID | 6114538 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 385999 |
End bp | 387261 |
Gene Length | 1263 bp |
Protein Length | 420 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641631796 |
Product | type II secretion system protein |
Protein accession | YP_001758708 |
Protein GI | 170724682 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1459] Type II secretory pathway, component PulF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCACGG CAACAGCAAG CAAAAAAACC AATAAAAAAA CAGCTAAAGC CCAACCTAAG GTTTTCACCT ATGAGTGGAA AGGCTTAAAC CGTGATGGAA AAAAAACCTC AGGAGAGCTT CGAGGAGCAA CGATCGCAGA GGTTAAGAGT CAGCTAAAGT CACAAGGAGT CAACCCTAAG TCAGTAAAGA AGAAAGCTGC ATCTCTGTTT AAACTCGGCG ACCCTAAAGT TACAGCCATG GACATCGCCA TGGTGACACG CCAAATAGCC ACCATGCTTC AAGCTGGTGT ACCTCTGGTA ACAACCATAG AGATGCTGGG CCGAGGTCAT GAAAAAGTAA AGATGCGAGA GCTGTTAGGT ACTATCTTAA CTGAAATACA GTCAGGTATC CCGCTCTCAG ATGCGCTTCG TCCCCACAGA CAATATTTCG ATGACCTCTA TGTCGATCTT GTCGCAGCTG GTGAGCACTC AGGCTCTCTC GATGCAGTAT TTGAGCGCAT AGCCCTCTAT AAAGAGAAAG CCGAGGCTCT GAAATCTAAA ATTAAAAAAG CCATGTTCTA CCCAGCAGCG GTAGTCATCG TTGCGATCGG GGTCACGACT CTTTTACTCC TGTTTGTAGT GCCACAGTTT CAGGAGATCT TTGCAGGCTT CGGTGCAGAG CTCCCCGCAT TCACGCAACT CGTCATTCAT ATATCTGAAG CACTGCAAGC ATCATGGTAT ATCTTTGCTG TTGCTATTAT CATCACTGTT TTTCTCTTTC GCCGCGCTCA CCTGCACTCG CAGACTTTCA GAGACAAGGT AGATGCACTT ATTTTAAAAA TACCAGCCGT AGGTCCTATC TTACACAAAG CTGCTATGGC GCGATTTGCA AGAACCTTAG CAACAACCTT TGCTGCAGGT GTCCCTCTTA TCGATGGGCT TGAATCAGCA GCAGGAGCGT CAGGTAATGC AGTGTATCGT AATGCGCTGC TCAAAGTGCG CTCTGAAGTG ATGTCGGGAA TGCAGATGAA TGTAGCGATG CGGACCACGG GACTTTTCCC AGACATGCTA ATTCAGATGG TAATGATAGG TGAAGAGTCA GGCTCATTGG ATAATATGCT GAATAAAGTG GCTAATATCT ATGAGATGCA GGTAGATGAT GCTGTAGATG GGTTATCTAG CCTAATCGAG CCTATTATGA TGGTGGTTAT TGGCACTCTA GTTGGTGGCT TAATCGTCGC CATGTATCTT CCTATCTTCC AGATGGGTAA GATTGTCAGC TGA
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Protein sequence | MATATASKKT NKKTAKAQPK VFTYEWKGLN RDGKKTSGEL RGATIAEVKS QLKSQGVNPK SVKKKAASLF KLGDPKVTAM DIAMVTRQIA TMLQAGVPLV TTIEMLGRGH EKVKMRELLG TILTEIQSGI PLSDALRPHR QYFDDLYVDL VAAGEHSGSL DAVFERIALY KEKAEALKSK IKKAMFYPAA VVIVAIGVTT LLLLFVVPQF QEIFAGFGAE LPAFTQLVIH ISEALQASWY IFAVAIIITV FLFRRAHLHS QTFRDKVDAL ILKIPAVGPI LHKAAMARFA RTLATTFAAG VPLIDGLESA AGASGNAVYR NALLKVRSEV MSGMQMNVAM RTTGLFPDML IQMVMIGEES GSLDNMLNKV ANIYEMQVDD AVDGLSSLIE PIMMVVIGTL VGGLIVAMYL PIFQMGKIVS
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