| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0256 |
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| Symbol | |
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| ID | 6114479 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 311934 |
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| End bp | 314045 |
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| Gene Length | 2112 bp |
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| Protein Length | 703 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641631737 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001758652 |
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| Protein GI | 170724626 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.135026 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATCGT GGTCCACTTT ATTGTCTAAG CTTACTTCGA GTAAGCCAAG CTTAATTTAC
CAACTTAATC TTTGGCAGCA AGAAGATTCA CCTCCGTTAG CCTTAATTCA AGATCATCAA
TTTATCGGTG CTAATTCGGC CGCGCTATCC TATTTTCAAA CTCAATCAGA TGGTTTTATT
CAAGCTAGTC CCTACGACTT CTCACCACGC ATCCAATCAT CAGGGCGAAG CAGCGTAGAG
TATACTCGAC AGATGATAGA GCAAGCATCT AAAGGCGATA TCACCGAGTT CAACTGGCAC
TATATTAGTC GGCAAGGAAC AGACCTACCC ACCAAGGTAA CCCTATTTCC ATTTAAGCTA
GATGAGCTTA ATGTGCTCAT TGCACAATTT GAATCCAAAA ACCGACGTAG CCAAACTAGA
ACCAAAGCAA GCAATGGCTT AGATACGCTA CCAAAAGAGT TGATGTCACT GATTTTAGAA
GATAATGCGG AAGCCGTGTA TATCACTGAT AGTCATCACT CTATCCTAGC GGTAAATAAA
GCCATGTGTC GTATCTGTGG CTATAGCAGC GAGCAGTTGA TCGGTAGCAA AACAGATCTT
ATCAATATCG ATGATCACCC ACTGAACGTA ACTGCCGAGT ATAACAAGGC GATTGAGGAT
CGTGGTAATT GGCAAGGAGA GGTGTGGAAA CTCAGATCAG ACGGTTCGCA GTTTCCTGCC
TGGAAAAGCT GCCGTAAGCT CACAGTTGAA GAGCAGGTCT ATTTTGTCAC CATTTTTAGT
GATATCAGTG CTAAAAAGCA GTTGGAGAGT AAACTCACCG AACAAGCCAT GTTCGACTCC
CTCACAGGAC TGCCTAATCG ATTTCATCTC AAAAAACTGC TAAATCAAGC GATTAAACAG
ACAGAAATGC GCCCCAATAC ACTCGGGGCT GTGATGTTTC TTGATCTCAA TGGCTTTAAA
AACATTAACG ACTGTTTTGG CCATGCTACC GGCGACAAGG TACTGCAATT GGTATCGGCT
CGATTGGAAG CCAGTTGTAT CGAAAATGCT GAAATTGCCC GCTTAGGCGG CGATGAGTTC
ACTTTAGTCG TGCAAAACTG CACAAGCCGT CAGGAGATAG AGGCGCTCTC TAAGCAGATC
ATGTCTCTAT TTGATACTCC GTTCGAAATA GACGATCAAA AGCTCTACTT GGGCACCAGT
ATCGGTATTT CACTGTTTCC AGAACACAGT AACCACGCAG ATAAACTACT CAGTCTTGCA
GATACTGCGA TGTACAGCGC CAAAAAGAGC CCTAGCCACC TACTTTTTTA CGATAAAAAG
ATGCATCAAG AGGCTGAGCA AAAACTCCAT ACACTAAGCG AACTACGCCA TGCCCATAAC
CTAGATCAGT TTAAGCTGGC CTATCAAGTC ATCGTCAATC TAGAGTGCAA CTCACTCATA
GGTGTTGAAG CACTTTTAAG ATGGCAAAAG CCCGATGGTA AAGTGATTAA TGCCTGTGAT
TTTGTTCCTC TGCTTGAAGA GACAGGCTTG CTTATCACCA TAGGTCAGTG GGCTCTGCAG
CTAGCGTGTG AACAGATGTT AGAGTGGCGA AACTACTCAC CCGATCTGAA AGTCTGTGTC
AATGTCTCGC CGATGCAACT TGAACATCAT GACTTTGTAC AGCAAGTCAC ACAGTCACTC
CAATCCAGTA AGCTACCAGC CGAAGCGTTA GTGCTTGAAA TTACTGAGCT TGCCCTGTTA
AGGCAGCCAG AAACAGTAAC AAAAACCTTA CTCGCCCTCA AAGCGCTTGG TGTGAGTATC
GCCATTGATG ATTTCGGTGC AGGGCTCTCA TCATTAAGTA AGCTAGGTAC CCTTCCCATC
GACAGCTTAA AGATAGATGC TGGCTTCGCC CAAAGACTCA GTGAACCTCA AGGTAAGGAG
CTTTGCCAAG CGATGATACA GTTAGCTCAA GCATTGGATA TCAGCTTTGT TGTTGAGGGA
GTTGAAACCC TGCAGCAAAA AGAGATATTA GAGAAGATGG GCAAAGGTTT TGGCCAAGGT
TTCTTCTTCG GCCATCCTGA AGATGCGACT AAATTTACTT TAGATAACTT CTCCACAGAT
AAAACAGCTT AA
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| Protein sequence | MTSWSTLLSK LTSSKPSLIY QLNLWQQEDS PPLALIQDHQ FIGANSAALS YFQTQSDGFI
QASPYDFSPR IQSSGRSSVE YTRQMIEQAS KGDITEFNWH YISRQGTDLP TKVTLFPFKL
DELNVLIAQF ESKNRRSQTR TKASNGLDTL PKELMSLILE DNAEAVYITD SHHSILAVNK
AMCRICGYSS EQLIGSKTDL INIDDHPLNV TAEYNKAIED RGNWQGEVWK LRSDGSQFPA
WKSCRKLTVE EQVYFVTIFS DISAKKQLES KLTEQAMFDS LTGLPNRFHL KKLLNQAIKQ
TEMRPNTLGA VMFLDLNGFK NINDCFGHAT GDKVLQLVSA RLEASCIENA EIARLGGDEF
TLVVQNCTSR QEIEALSKQI MSLFDTPFEI DDQKLYLGTS IGISLFPEHS NHADKLLSLA
DTAMYSAKKS PSHLLFYDKK MHQEAEQKLH TLSELRHAHN LDQFKLAYQV IVNLECNSLI
GVEALLRWQK PDGKVINACD FVPLLEETGL LITIGQWALQ LACEQMLEWR NYSPDLKVCV
NVSPMQLEHH DFVQQVTQSL QSSKLPAEAL VLEITELALL RQPETVTKTL LALKALGVSI
AIDDFGAGLS SLSKLGTLPI DSLKIDAGFA QRLSEPQGKE LCQAMIQLAQ ALDISFVVEG
VETLQQKEIL EKMGKGFGQG FFFGHPEDAT KFTLDNFSTD KTA
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