Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0209 |
Symbol | |
ID | 6114432 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 258458 |
End bp | 260167 |
Gene Length | 1710 bp |
Protein Length | 569 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 641631690 |
Product | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase |
Protein accession | YP_001758605 |
Protein GI | 170724579 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
TIGRFAM ID | [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0000199478 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCAAATTG AAAAGACAGC TGAGCTGAAC CTATTATGGG GCACGCTTAT TTTAGAAGAG CTATCCCGCT TAGGCGTGCA ACATATCTGT ATGGCACCGG GCTCACGCTC GACACCGCTC ACCTTAGCGG CGGCAAAACA GAGCAAATTA AAGCAACATC TGCACTTCGA TGAGCGTGGA CTCGGCTTTA TGGCACTAGG ACTGGCTAAG GCCAGCCAAG CTCCCGTTGC AGTTGTTACC ACTTCAGGTA CTGCGGTAGC GAATCTATAT CCAGCAGTGA TTGAAGCCTG GTTAACTCAT GTCCCGCTAA TCGTATTATC AGGTGATAGA CCGCCGGAGC TTATCGATTG TGGTGCCAAT CAAGCCATCA TTCAGCCCGC TATCTTTGCT CAATATGCAA AACAGATAAA CCTATCGACA CCGGATCTGG CTATCCGCCC CGAAGCACTA CTGACCTTGC TCGATGAAGC CATCAGTAAC CAAAGCCAAC CTCTGCACAT CAACTGCATG TACAGAGAGC CACTTTATCC GTCGACCATG AGTGCGAACT TTACCCAATA CCTGAGCACA CTCGGCAACT GGCAGCACAC CAATCATGCT TATAATCAGT ATGGAAAACC TAACCTAAGC AGCTTGCCAA GCAGTGATGC CATGGCACGC TTTGTTCACG GTAAAGGCGT TATTATCGCT GGCACACTCA CACCAGATTG TGACCCACAA GCTCTAGTTG CCCTGTCGCA AAAGCTGGGC TGGCCCCTGC TCACTGACGC TCAATCTCAG CTCAGACAGC ATCCAGGGGT AATAGGAAAT ATCGATCAAC TTCTGCATCA ACCAAAAGCC AAGGCACTGC TGATGCAAGC TGAGCGGGTA CTTGTTATTG GCGGTCGTTT GCTCTCTAAA CGCCTGATCG ACTATCTGGC CCAAAATAAG TGGAAGAGCT ATTGGCAAGT ATTGCCGCGG CAGATGAGGT TAGACCCCAG CCATAGCGCC AAACAGATCT GGCATGCCAG TGTTACCAAT ATCACTTCAC TCTCCTGGCC ACGCTCATCG GAGGCTAACT GGGCGCTTCA GCTTACCCAA CAAAATGATG AGATGGAGAG ATTATTTGAG CAGCAGATAG ATAACGCTGA GTTTGGAGAG GCCATGGTGG TTCGCGCCAT CGCGAAATCA CAAACCAAGC AGCAACAGCT ATTTATTGGT AACAGCCTCC CAGTCAGGCT CTACGATATG TTTGCACCAA TCACCACAGA GCAGGGAGCA ACTTTTACCA ATCGCGGCGC ATCTGGCATC GATGGGCTAC TGGCGAGTGC TTGCGGCGTT GCCATGCATC AAGGCAGGGC CACGACTCTG ATCATTGGTG ATATCTCCCA GCTACACGAT CTAAACTCAC TAGCTATTGC CAGCCACTGC TCAAGCCCGC TGGTGATCGT TATCCTAAAC AATGACGGCG GCAATATTTT TAATCTACTG CCTGTACCTG ATGAGAAGCT TAGAAGCGAT TACTATCGAC TCGCCCATGG GTTCGAGTTT GGCTATGGTG CGGCTATGTT TGGTATTCCC TATAACAGAG TGGAGGAGTT AGAGAGCTTT GAAGAGTCAT ATCAAGATGC TATCCACTAT GAAGGCGCCT CAGTGATTGA AGTCATCGTC CCACAGCAGC AAGCGAGCGA TCAGATCGCC CGAATTGCCA GCTGGATAAA ACAGAGCTGA
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Protein sequence | MQIEKTAELN LLWGTLILEE LSRLGVQHIC MAPGSRSTPL TLAAAKQSKL KQHLHFDERG LGFMALGLAK ASQAPVAVVT TSGTAVANLY PAVIEAWLTH VPLIVLSGDR PPELIDCGAN QAIIQPAIFA QYAKQINLST PDLAIRPEAL LTLLDEAISN QSQPLHINCM YREPLYPSTM SANFTQYLST LGNWQHTNHA YNQYGKPNLS SLPSSDAMAR FVHGKGVIIA GTLTPDCDPQ ALVALSQKLG WPLLTDAQSQ LRQHPGVIGN IDQLLHQPKA KALLMQAERV LVIGGRLLSK RLIDYLAQNK WKSYWQVLPR QMRLDPSHSA KQIWHASVTN ITSLSWPRSS EANWALQLTQ QNDEMERLFE QQIDNAEFGE AMVVRAIAKS QTKQQQLFIG NSLPVRLYDM FAPITTEQGA TFTNRGASGI DGLLASACGV AMHQGRATTL IIGDISQLHD LNSLAIASHC SSPLVIVILN NDGGNIFNLL PVPDEKLRSD YYRLAHGFEF GYGAAMFGIP YNRVEELESF EESYQDAIHY EGASVIEVIV PQQQASDQIA RIASWIKQS
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