Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0105 |
Symbol | |
ID | 6114328 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 126298 |
End bp | 127479 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641631586 |
Product | diaminopropionate ammonia-lyase |
Protein accession | YP_001758501 |
Protein GI | 170724475 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1171] Threonine dehydratase |
TIGRFAM ID | [TIGR01747] diaminopropionate ammonia-lyase family [TIGR03528] diaminopropionate ammonia-lyase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGCTAA AGCTGACTCA AAATGATTTC TTTAACGGCG AGACCTCTGA GCTTTTCACA GCCCAGGTTG CAGAACAAAC TCGTCAATTC CACCAGCAGA TCGAAGCTTA TCAACCGACT CCGCTTATCT CGCTAGAGCA GCTAGCCGCA CGTTTAGGTG TTAAAGCGAT TCTGGTAAAA GATGAGTCTT ACCGCTTCGG TTTAAATGCT TTTAAAGTGT TAGGCGGTTC TTACGCATTA GGTAAACAAT TAGCTGAGCA CTTAAATGTA GATATCAGTG AAATTGATAT GAAAACCGTT GCAGCTAAGC TAAGCGAGCC ATTGGTGTTT GCCACAGCAA CAGCGGGTAA CCACGGAACA GGTGTGGCTT GGGCTGCACG TGAAATGGGC CAAAAGGCTG TTGTTTACAT GCCAAAAGGT TCATCTCAAG CAAGCGTAAC TCGTATTCAG AATCTAGGTG CTGAGTGTAT CGTTACTGAC TGTAACTACG ATGACACAGT ACGTATCGCT AACCAAACCG CCACAGAAAA TGGTTGGATG CTAGTACAAG ATACTGCATG GGAAGGTTAC GACAAGATCC CAACTTGGAT CTCGCAAGGT TATATGACCA TGGCAGTTGA AGCCCAAGAG CAAGTTGACG CCATGGGTCT TAAGCCAACT CACCTAATGC TACAAGCGGG TGTTGGCGCA ATGGCTGGCG GCATTTTAGG GTATTTTGCT GACAAAGTTG GCGCGACTAA CTTCAAGACC ATTATTGCAG AGCCTGCAAA AGCAGATTGC ATCTACAACT CTGGTATTAA AGGTGAGATG GTTGCCGTAA CTGGCGAGTT AAACTCTATC ATGGCAGGTC TTGCATGTGG CGAGCCTAAC CCAGTGACTT GGCCTATCCT AAAGCAGTGC AGCAGCTTCT TCGCATCAGT TGAAGATGAA GTGACAGCTA CAGGTATGCG TATTCTTGGT AACCCGCTAG CAGGCGATAC CAAAATTGTT AGCGGTGAGT CAGGAGCACT AAATCTTGGC CTACTGTACA TGCTAGCTAG CCGTGAAGAG TACACTGAGT ACCGCACTCA ACTTGGTCTA GACCAAGATG CGATTATCAT GCTGTTCAGC ACTGAAGGCG ACACTAACCC AGACCGTTAC CGTCAAATCG TTTGGGAAGG TGCACTAAGC ACAGCGAAAT AA
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Protein sequence | MMLKLTQNDF FNGETSELFT AQVAEQTRQF HQQIEAYQPT PLISLEQLAA RLGVKAILVK DESYRFGLNA FKVLGGSYAL GKQLAEHLNV DISEIDMKTV AAKLSEPLVF ATATAGNHGT GVAWAAREMG QKAVVYMPKG SSQASVTRIQ NLGAECIVTD CNYDDTVRIA NQTATENGWM LVQDTAWEGY DKIPTWISQG YMTMAVEAQE QVDAMGLKPT HLMLQAGVGA MAGGILGYFA DKVGATNFKT IIAEPAKADC IYNSGIKGEM VAVTGELNSI MAGLACGEPN PVTWPILKQC SSFFASVEDE VTATGMRILG NPLAGDTKIV SGESGALNLG LLYMLASREE YTEYRTQLGL DQDAIIMLFS TEGDTNPDRY RQIVWEGALS TAK
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