Gene Swoo_0060 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0060 
Symbol 
ID6114282 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp72902 
End bp75739 
Gene Length2838 bp 
Protein Length945 aa 
Translation table11 
GC content47% 
IMG OID641631540 
ProductDNA polymerase I 
Protein accessionYP_001758456 
Protein GI170724430 
COG category[L] Replication, recombination and repair 
COG ID[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains 
TIGRFAM ID[TIGR00593] DNA polymerase I 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0959551 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000934143 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCCGAAA ACTCCCTTCT ATGGCATGCT AGCGCCACTA TCGAAAACAG ATCTCGAAAC 
CAAAGCCGAA TACTTATTAT GCCTAAAATT GCTGAAAACC CTTTAGTTCT TGTGGATGGT
TCTTCATACC TCTACCGAGC CTATTACGCA CCACCACATC TAACAAATTC AAAAGGGGAA
GCGACTGGAG CAGTCTATGG CGTGATCAAC ATGCTACGCA GCTTACTTAA TCAATATAAA
CCAAGTCAGA TGGCTGTGGT ATTCGATGCA AAAGGTAAAA CTTTCCGTAA TGATATGTAC
GAAGAGTACA AGGCACAGCG TCCACCTATG CCAGATGATC TTCGCACCCA AATAGAGCCA
CTGCATAATA TTATTCGCGC ATTAGGTTTA CCTCTTGTCT GTATTCCCGG CGTCGAAGCC
GACGATGTGA TAGGCACGAT TGCGACACAA GCCAGCAAAG AGGGACGCGC CGTCCTAATC
AGCACTGGTG ATAAGGATAT GGCTCAGCTG GTCGATGATA ATGTCACACT TATCAACACC
ATGACCAATA CCATTATGGG ACCGGAAGAG GTGACTGAAA AGTTTGGTGT AGGGCCTGAG
TTGATTATTG ATCTGCTAGC ACTGCAGGGC GATAAGGCAG ATAACATTCC AGGTCTTCCA
GGTGTTGGTG AGAAAACAGC AGTGGCTATG CTAACAGGGG CGGGTAGCGT CGAGCAGATC
TTAGCGGCTC CAGAAAAGAT ACCGGCTTTA GGCTTTAGAG GTTCTAAAAC CATGCCTGCC
AAACTCGCCG AACATGGTGA GATGCTTAAG TTATCCTACG AGTTAGCGAC CATTAAACTC
GATGTAGAGA TGGAGCAAGA CTGGAAAGAG TTAGTCATTG CACCAGCGAA TAAAGATGAT
CTGGTGAAAT ACTATGGCGA GATGGAATTT AAGCGCTGGT TAGCCGAAGT CTTAGACAAT
AAAGGCAGCT CAGCTCAAAG CTCAGATAAC AGTGCAGATG AAGAGGAGGT TGTTCCACAG
GCTATCGACG CCGAATATGA GACAATTCTG ACTCATGAAG CTTTGGACAA ATGGATCGAA
CAACTCACCA AAGCAGATCT CATTGCTATC GACACTGAGA CCACCAGCCT AGATTACATG
ACAGCTAAGC TTGTGGGGAT CTCGTTTGCT GTAGAGGTTG GCAAAGCCGC TTATCTCCCA
TTAGCACACG ATTACCTCGA TGCTCCTGAG CAACTGGATT TCGATGAGGC TATCGCCAAG
CTTAAGCCTC TACTTGAAGA TCCCAAGCTT AAAAAAGTGG GACAAAACCT TAAATATGAC
ATCAGCATCT TTGCCAATGT CGGCATCAAG CTACAAGGTG TTGCCTTCGA TACCATGCTC
GAGTCCTACG TATTTAACTC GGTAGCTTCA AAGCACAATA TGGATGATCT GGCACTTAAA
TACCTAGGTC ATAAAAATAT TAGTTTCGAA GAGATCGCCG GGAAAGGCGC TAAGCAGCTC
ACCTTTAATC AGATCGATCT CGAAACAGCT GCCCCTTATG CCGCAGAAGA TGCCGACATC
ACCCTTAGAT TACATCAACA TCTATGGGCA AGATTAGAGA AAGAACCAAA GCTTGCTTCA
GTATTTACTG ATATCGAACT GCCACTGGTT CAAGTACTCT CAAAGATCGA ACGCCAAGGC
GTACTTATCG ACAGCATGAT GCTAGGTCAG CAAAGCCAAG AGATCGCTAT CTCTATCGAT
AAGCTAGAGC AAGATGCTTT CGAAATAGCT GGAGAAACCT TCAATCTAAG TTCACCTAAG
CAGTTACAAG CACTCTTTTT CGAGAAGCTT GGCTACCCAG TGATTAAGAA GACCCCCAAG
GGAGCCCCTT CAACCGCCGA AGAGGTGTTG GTCGAGCTTG CTCTAGATTA CCCATTGCCT
AAGATAATCT TGCAACACAG AAGCTTAGCG AAGCTTAAAA GCACTTACAC TGACAAGCTT
CCCCTAATGG TTAATGCTCA ATCTGGCCGA GTACACACCA GTTATCACCA AGCTAATGCC
GCAACGGGTC GTTTATCTTC CAGCGAACCT AATCTGCAAA ATATCCCGAT CCGAACCGAA
GAGGGACGCC GCATACGCCA TGCCTTTATT GCTCAAGAGG GTAAAAAAGT GCTGGCAGCC
GATTACTCTC AAATCGAGCT ACGGATCATG GCTCATCTGT CACAAGACAA GGGCTTACTC
ACCGCTTTTG CTGAAGGTAA AGATATTCAT AAAGCCACGG CAGCAGAGGT ATTTGGTGTT
GATTTCAGTG AGGTCACCAC AGAGCAGCGC CGCCGTGCTA AGGCCGTTAA CTTCGGCTTA
ATCTACGGCA TGTCTGCATT TGGTCTTGCT AGGCAGCTTG ATATTCCTCG CGGTGAAGCG
CAAAAGTATA TCGACACTTA CTTCGATCGC TACCCAGGTG TGCTCAAGTA TATGGAAGAC
ACCAGAGCAG AAGCCGCTGA TCTTGGTTAC GTCTCGACTC TTTATGGCCG CAGACTCTAT
CTACCTGCGA TTAAAGACAG AAACGCCATG CGCAGACAAG CCGCCGAGCG CGCCGCAATT
AACGCGCCTA TGCAAGGAAC AGCCGCTGAT ATTATTAAGA AGGCAATGAT CAATATTGCT
AGCTGGATCG AATCTGAGAC CCATGGTGAG ATCACTATGA TCATGCAGGT ACACGATGAA
TTGGTATTTG AGGTCGATAG TGATAAAGCT GAAGCATTAA AAGAGCAGAT ATGTAAGATG
ATGGCCGATG CAGTTAGCTT AGATGTCGAA CTACTCGCCG AAGGCGGAAT AGGCGACAAC
TGGGAGCAAG CTCACTAA
 
Protein sequence
MAENSLLWHA SATIENRSRN QSRILIMPKI AENPLVLVDG SSYLYRAYYA PPHLTNSKGE 
ATGAVYGVIN MLRSLLNQYK PSQMAVVFDA KGKTFRNDMY EEYKAQRPPM PDDLRTQIEP
LHNIIRALGL PLVCIPGVEA DDVIGTIATQ ASKEGRAVLI STGDKDMAQL VDDNVTLINT
MTNTIMGPEE VTEKFGVGPE LIIDLLALQG DKADNIPGLP GVGEKTAVAM LTGAGSVEQI
LAAPEKIPAL GFRGSKTMPA KLAEHGEMLK LSYELATIKL DVEMEQDWKE LVIAPANKDD
LVKYYGEMEF KRWLAEVLDN KGSSAQSSDN SADEEEVVPQ AIDAEYETIL THEALDKWIE
QLTKADLIAI DTETTSLDYM TAKLVGISFA VEVGKAAYLP LAHDYLDAPE QLDFDEAIAK
LKPLLEDPKL KKVGQNLKYD ISIFANVGIK LQGVAFDTML ESYVFNSVAS KHNMDDLALK
YLGHKNISFE EIAGKGAKQL TFNQIDLETA APYAAEDADI TLRLHQHLWA RLEKEPKLAS
VFTDIELPLV QVLSKIERQG VLIDSMMLGQ QSQEIAISID KLEQDAFEIA GETFNLSSPK
QLQALFFEKL GYPVIKKTPK GAPSTAEEVL VELALDYPLP KIILQHRSLA KLKSTYTDKL
PLMVNAQSGR VHTSYHQANA ATGRLSSSEP NLQNIPIRTE EGRRIRHAFI AQEGKKVLAA
DYSQIELRIM AHLSQDKGLL TAFAEGKDIH KATAAEVFGV DFSEVTTEQR RRAKAVNFGL
IYGMSAFGLA RQLDIPRGEA QKYIDTYFDR YPGVLKYMED TRAEAADLGY VSTLYGRRLY
LPAIKDRNAM RRQAAERAAI NAPMQGTAAD IIKKAMINIA SWIESETHGE ITMIMQVHDE
LVFEVDSDKA EALKEQICKM MADAVSLDVE LLAEGGIGDN WEQAH