Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0012 |
Symbol | glyS |
ID | 6114229 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 15573 |
End bp | 17642 |
Gene Length | 2070 bp |
Protein Length | 689 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641631487 |
Product | glycyl-tRNA synthetase subunit beta |
Protein accession | YP_001758408 |
Protein GI | 170724382 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0751] Glycyl-tRNA synthetase, beta subunit |
TIGRFAM ID | [TIGR00211] glycyl-tRNA synthetase, tetrameric type, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.000111985 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAATTATG AAAACTTACT CATTGAAGTT GGTACCGAAG AGCTGCCTCC AAAAGCCCTG CGCAAACTGG CAGAATCTTT TGTTAGCAAC TTTACCGATG AGCTTGAAAA AGCAGAACTA AGCTTCGAAT CGGCCCAGTG GCACGCAGCC CCTCGCCGCC TAGCTTTTAC TGTAAACCAA TTAGTTCTAG CGCAAGCTGA CAAGGTCGTT GAGAAGCGTG GGCCTGCGAT TGCCCAAGCA TTTGATGCCG ATGGCAACCC AACTAAAGCC GCCATGGGCT GGGCTCGTGG TAACGGTATT AGCGTTGAAC AAGCTGAGCG CCTAAAAACA GATAAAGGTG AATGGCTACT TCATCAAGCT AAAGTTGTTG GTGTAGAAAC CAAAAGCCTT ATCAATGACA TGGCACAACG CGCCCTCGAT AAATTGCCAA TTCCTAAGCC TATGCGTTGG GGAACAAGCA AGACTCAATT TATCCGTCCT GTACACACAG TCACTATGTT ACTAGGTAGT GAGCTCGTTG AAGGTGAGCT CCTTGGCGTT AAATCGGCTC GTGTTATTCG TGGTCACCGA TTCATGGGTA AAAAGAGTTT TGAGTTAGAT CATGCTGATA ACTACCTGTC TGCACTCAAA GAGCAAGGCA TGGTTCTTGC CGATTATGAA GCGCGTAAAG CGATCATAAA AACAGATGCA GAGGCTGCAG CCGCTAAGAT TGGTGGTGTT GCAGATCTTG AAGATGATCT ACTTGAGGAG GTTACCTCCC TAGTTGAGTG GCCGGTTGTG CTAACGGCAA ACTTCGAAGA GAAGTTCCTC GATGTACCAG CAGAAGCCCT GGTTTACACC ATGAAAGGCG ATCAGAAGTA CTTCCCAGTC TTCGATAAAG CTGGCCAATT ACTACCTCAC TTCATCTTCG TGACTAATAT CGAATCGAAA GATCCTCAAG TGATCATATC TGGTAATGAG AAAGTGGTTC GTCCACGTCT TGCCGATGCA GAGTTCTTCT TCGAAACCGA CAAGAAACAA ACTCTTGAGT CTCGCCTTGC TAGCCTAGAA ACGGTAGTTT TCCAAAAACA ACTTGGCACA ATCAAGCAGC GTGTTGAGCG TATCTCACAA CTTGCGGGCT ATATTGCGGC CTCAATAGAT GCAGATAGCG ATGAAGCCTC ACGTGCAGGT CTACTCTCTA AGTCAGATCT GATGACGAAC ATGGTAATGG AGTTCACCGA TCTTCAAGGC ACTATGGGCA TGCACTATGC GCGCCTTAAC GGTGAAACTG AAGCCGTCGC TGTTGCCCTT GCTGAGCAGT ATAAGCCTAA GTTCTCTGGC GATACTGTAC CAACAGCGCC TATCTCAGTC TGTGTTGCAC TGGCTGAAAA GCTAGATACC TTAGTCGGTA TTTTCGGTAT CGGACAAGCA CCAAAAGGTG CAGCAGATCC ATTTGCACTA CGCCGTGCAG CAATTGGTGT ATTGCGTATC TGTTTAGAGA ATAATCTGCC ACTAGATCTT GTTGATTTAA TAGCTAAAGC ACAAGAGCTA CACGGTGATA ATCTCACGAA TGATAAAGCC GCAGAGCAGG TACTTGAGTT CTTTATGGGA CGTTTCCGCG CTTGGTACCA AGATCAAGGT GTTAGCGTAG ATGTGATTTT AGCAGTACTA GCTCGCCGTC CTACAGCCCC TGCTGATTTC GATAGCCGTA TTAAAGCCGT TGCTCACTTC AGAAGCCTTG AACAGGCGTC TGCACTTGCA GCAGCGAATA AGCGTGTATC AAATATTCTG GCAAAAGTTG AAGGTGAACT AGCCACTGAT ATCAGCAGTG AGCTATTGGT GGAAAACGCT GAAAAGGCAC TAGCTGAAAA GCTAAATGAG CTTCAACCTC AACTAGCACC TCTGTTTGCT GCAGCTAACT ACCAGCAAGC GCTATCTTTG CTAGCCGATC TACGTGAAAG CGTCGATACC TTCTTCGAAG ATGTGATGGT GATGGCAGAT GATGAAGCCC TAAAGAACAA TCGCTTAGCC TTGTTATCAA GCCTGCGCGA ACAGTTCCTT CACGCTGCAG ATATCTCACT GCTTCAGTAA
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Protein sequence | MNYENLLIEV GTEELPPKAL RKLAESFVSN FTDELEKAEL SFESAQWHAA PRRLAFTVNQ LVLAQADKVV EKRGPAIAQA FDADGNPTKA AMGWARGNGI SVEQAERLKT DKGEWLLHQA KVVGVETKSL INDMAQRALD KLPIPKPMRW GTSKTQFIRP VHTVTMLLGS ELVEGELLGV KSARVIRGHR FMGKKSFELD HADNYLSALK EQGMVLADYE ARKAIIKTDA EAAAAKIGGV ADLEDDLLEE VTSLVEWPVV LTANFEEKFL DVPAEALVYT MKGDQKYFPV FDKAGQLLPH FIFVTNIESK DPQVIISGNE KVVRPRLADA EFFFETDKKQ TLESRLASLE TVVFQKQLGT IKQRVERISQ LAGYIAASID ADSDEASRAG LLSKSDLMTN MVMEFTDLQG TMGMHYARLN GETEAVAVAL AEQYKPKFSG DTVPTAPISV CVALAEKLDT LVGIFGIGQA PKGAADPFAL RRAAIGVLRI CLENNLPLDL VDLIAKAQEL HGDNLTNDKA AEQVLEFFMG RFRAWYQDQG VSVDVILAVL ARRPTAPADF DSRIKAVAHF RSLEQASALA AANKRVSNIL AKVEGELATD ISSELLVENA EKALAEKLNE LQPQLAPLFA AANYQQALSL LADLRESVDT FFEDVMVMAD DEALKNNRLA LLSSLREQFL HAADISLLQ
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