| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swol_1931 |
|---|
| Symbol | |
|---|
| ID | 4282403 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008346 |
|---|
| Strand | + |
|---|
| Start bp | 2202462 |
|---|
| End bp | 2205269 |
|---|
| Gene Length | 2808 bp |
|---|
| Protein Length | 935 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638138814 |
|---|
| Product | transcriptional regulator |
|---|
| Protein accession | YP_754599 |
|---|
| Protein GI | 114567445 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCCA GCGAAACAAG TTTAAGCCCT TTTGTAGTTC GATATGATAC CAACCTCCAG
GATGTATCCT CGATTTTCAA GCGGAATGAT ATCGAATTCC TACTGGTATC TGACGAAAAA
AAGCAGATTA TCGGCAGGAT TTTTCCCCAA AATATTGTAG AAGCTAACGA TATCGGACTG
GCACCCGATA CCCCGGTTCA GCAGATTATG CCTTCTAATC CACAGTTTAT TGAATTCATT
CATGAACTGC ATTTAGTTTT TGAGGATTCC TTTGCTTCAG AACAGGATAC TTCACCAGGA
AATAACTATA TCAAGGATAG TTATTTCCAT CTTATATGGC AACTCTGCCG AATATGGCAT
AAAAACGCCA GCGAATGGGA GGCCTGTTTC AATTCTATTT ATAACCCGGT TATTTCCATT
GACGGGGAAG GAAGAATTAA CCTTCTTAAC CGCGCCCTGG AAAAATCCAC TGGTATTAGT
GCCTCTGAAG CTCGCGGTAA AAAAGTCACT GATATCTTTA CCAACAGCAA GCTGAACGAG
GTCTTGACCA CGGGTCAAAC CCAGGCCACC CGCAAGATTC AATATCAGGA CAAGATCCTT
CTTACCAACC GTACTCCCTT GTATAAGAAT GGAAGAATTG CCGGAGCGGT GGCCGTCCTG
CAAGATATCT CCGAACTGGA GCATATTGCT GAAGAACTGG CCCGCACTCG GGAACTTAAC
CGGCAATTGG ATGCTATTTT CGAATCTTCT TTCGATGGTC TTTATTTAAC TGATGGAGAA
GGAAACACTT TGCGCCTCAA CCAGGGATTT GTGCGTATAA CCGGAATCAG TATGGAAGAA
TGCGTTGGTT CTAATATGCG TGAATTAGTT GATACCGGGG TCTTTTCCGA TTCCGGCACC
TTGCTGGCCC TGGAGAAACA GGAGCGAACC ACTATTACTC TGGTAGCCAG AACCGGCAAA
GAGGTCCTGG TCACCAGCAC ACCCATTTTC GATGAGCAAG GCAATATTGC TTTTATTATT
ACCAATGTTC GCGATATTAC CGAACTTAAC GAGTTGGAGC GCAGGCTTAA ACATATAGGA
TTGCGCGATC GTGAACTGGA TACTATTCTG GATTCCTCTT TTGATGGTAT TTTTATTACC
GATGGTGAAG CCAACACCCT GCGCCTTAAT CAGGCCTTCG AACGTATTAC CGGGGTAACA
GCGCAAGAGT GTGTCGGGCG CAATATGAAA GAACTGGTGG ACGAAGGTTA TTTCTCCGGT
TCAGGAACGT TGCTAGTCCT GGAAAAGAGA GAAAGAGCCA CCATTACTCT GGTGACCAGA
ACCGGCAAGG AGGTTCTGGT TACCAGCACA CCCATTTTCG ATGATCAAGG TAATATTATG
CTGGTAGTTA CCAATGTTCG CGATATAACA GAATTAAATG AGCTGGAGCG GGAATTCAAA
AAGATGGTAG GCCTGCGGGA ACGGGAATTG GATGCGGTTT TCGAATCCTC CTATGATGGG
CTTTACATTA CGGATGGCGA AGCCAATACC CTGAGGCTTA ACGAGGCTTT TGAACGCATA
CTCGGAGTAA AAGCCGAGGA ATGTATAGGT CGCAATATGA GAGAACTGGT GGCTGAAGGT
GTCTACTCCC GCAGCGGCAC CCTGCTGGCT TTAGAGAAAC AGGATCAGGT AACTATTACT
TTGCAGGCAA AAACCGGAAA AACCGCCCTG GTAACCAGTA CACCCATACG CGATGAACAT
GGCAACATTA TCCTGGTGGT AACCAATGTT CGGGACATCA GCGAGTTGAA CGAACTGCAG
GAGAAATTGG GACACGCTGA AGAGCTTAGC CGTTTCTTCC AGAGTGAATT GCAGGAAATG
AAACTACGTA CCCAGTGTGT AATTCACTCC AGTAAAATGC GGGAATTAAT CAGTATGGTA
GTCCGAATAG CAGCAGTGGA TTCTACTGTC CTCATACAAG GCGAATCCGG GGTGGGCAAG
GAACTGGTGG CCAATACCAT ACACAGCAAC AGCAACCGCA GAGAGCAACC GATGATAAAG
ATAAACTGTG GGGCTATTCC CGAAAATTTA CTGGAATCTG AGCTTTTTGG CTATGAACCG
GGAGCCTTTA CGGGAGCCAG CAAGCAAGGC AAGGTCGGCA TGTTTGAAGT GGCCGATCAA
GGCATCTTGT TTCTGGATGA AATCGGTGAC CTCCCTCTAA GCCTGCAGGT TAAACTGCTG
AGAGTATTGC AGGATAAAGA AATTTTGCGG GTAGGAGGCA CCAAACCCAT AAAGGTGGAT
GTGCGAATAA TCGCTGGCAC CAATTATAAT CTCAAGGAAA TGGTGGAGAA AAAGCTGTTC
CGCAAAGACC TTTTTTATCG CTTGAATGTT ATACCCATTA CCGTTCCGCC TCTGCGCGAG
CGCCGGGAAG ATATCCCTAT TCTGGCCAAT CATTTTCTGG ATAATTTTAA CCAGAAGCAT
GGAATGAACA AGAAGCTATC CGGCAGTATC CTGGCTTATT TCATGGAATA TGACTGGCCG
GGCAATGTTA GGGAGTTGGA AAACCTGGTC GAGCGCCTGG TAGTAACCAG CCTCAACCAA
ACTATTACCG CTCACGATCT CTCTGCCTGG TCGGAACTGA AACCCGAAAA TAAATCTGAT
AATGAACACG GAATCGTTCG ACTGCAGGAT GCCCTGGAGA ATACGGAAAG AAGAATACTG
GAAAATGCCT TTTCAGTCTG CAAGTCTACC TATGAGGTGG CCAGAGCATT GGGTATTAGC
CAGCCTACAG TAGTTAGGAA AGCAGCAAAA TATGGAATAA GAGGGTAA
|
|---|
| Protein sequence | MNSSETSLSP FVVRYDTNLQ DVSSIFKRND IEFLLVSDEK KQIIGRIFPQ NIVEANDIGL
APDTPVQQIM PSNPQFIEFI HELHLVFEDS FASEQDTSPG NNYIKDSYFH LIWQLCRIWH
KNASEWEACF NSIYNPVISI DGEGRINLLN RALEKSTGIS ASEARGKKVT DIFTNSKLNE
VLTTGQTQAT RKIQYQDKIL LTNRTPLYKN GRIAGAVAVL QDISELEHIA EELARTRELN
RQLDAIFESS FDGLYLTDGE GNTLRLNQGF VRITGISMEE CVGSNMRELV DTGVFSDSGT
LLALEKQERT TITLVARTGK EVLVTSTPIF DEQGNIAFII TNVRDITELN ELERRLKHIG
LRDRELDTIL DSSFDGIFIT DGEANTLRLN QAFERITGVT AQECVGRNMK ELVDEGYFSG
SGTLLVLEKR ERATITLVTR TGKEVLVTST PIFDDQGNIM LVVTNVRDIT ELNELEREFK
KMVGLREREL DAVFESSYDG LYITDGEANT LRLNEAFERI LGVKAEECIG RNMRELVAEG
VYSRSGTLLA LEKQDQVTIT LQAKTGKTAL VTSTPIRDEH GNIILVVTNV RDISELNELQ
EKLGHAEELS RFFQSELQEM KLRTQCVIHS SKMRELISMV VRIAAVDSTV LIQGESGVGK
ELVANTIHSN SNRREQPMIK INCGAIPENL LESELFGYEP GAFTGASKQG KVGMFEVADQ
GILFLDEIGD LPLSLQVKLL RVLQDKEILR VGGTKPIKVD VRIIAGTNYN LKEMVEKKLF
RKDLFYRLNV IPITVPPLRE RREDIPILAN HFLDNFNQKH GMNKKLSGSI LAYFMEYDWP
GNVRELENLV ERLVVTSLNQ TITAHDLSAW SELKPENKSD NEHGIVRLQD ALENTERRIL
ENAFSVCKST YEVARALGIS QPTVVRKAAK YGIRG
|
|---|
| |