Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swol_1425 |
Symbol | secD |
ID | 4282916 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
Kingdom | Bacteria |
Replicon accession | NC_008346 |
Strand | - |
Start bp | 1635859 |
End bp | 1637070 |
Gene Length | 1212 bp |
Protein Length | 403 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638138305 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_754103 |
Protein GI | 114566949 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000290493 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAAGTTGC AAAAAAATTT CAGCGTCGCA GTAATTTTAG CCATTATTGT AGCCCTTGGC GCCTTGTCCT ATTTTACCTA CCAACCAATT TTGAAAAACT TGAATCTTGG ATTGGATCTA AGGGGCGGGC TGCATGTGGT TTTGGAGGCC CAGGAAAAAG AGGGGCAGAA GATAAGTGCC GATACTATAA ACAAGGCCGT AGGTATACTC AGAAACCGGG TGGACAAGCT GGGGGTCAGT GAACCGCTGA TTTATCCCCA GGGTGAACGC CGGGTAGTGG TGGAATTGGC CGGAATAGAT GATCCGGAAG AAGCGGTGAA CATAATTAAA AACACGGCTG AGCTTGAATT CTGGGATGAA AGCGGCAAGG TGCTGGTAAC CGGAAAACAC CTGAAGGAAG CGCAGGCCAG AGCCGGCAGC GAAGGCCAGG GTTTTGAAGT TGCCATTGAC TTTGATAAAG AAGGGGCCAA GCTTTTTGCT GATGCTACCA CCGCCAATGT CAATAAACCG CTGATGATAG TTATTGATGG CAAGGTCATC AGTGCTCCTA CTGTATCCGG TCCGATAACC GATGGAAGCG CCAGAATAAC CGGTAACTTT ACCGCCAAGG AAGCGGAGAA CCTGGCAGTA TTACTGCGTT CCGGTGCTTT ACCGGTTTCA TTTAAGATAC TGGAGAAGAG GACGGTTGGT CCTACCCTGG GAAGTGATTC CTTGAGTAAG AGTGTGAAAG CCGGAATCGC CGGTCTTATT GCCATCTTGA TTTTCATGCT GGGGTATTAT CGTTTGCCTG GGTTTATAGC CGATATTTCC ATAGTTCTTT ATTCGATTCT GGTTTTAGGA ACCATGACCC TCTTTGGTGC AGTATTAACC CTGCCGGGGA TAGCGGCCTT CGTGTTATCT ATCGGCATGG CGGTTGATGC TAATATCATT ATTTACGAGA GAATCAAGGA AGAATTGCGC TGGGGCAAGA CCTTGAAGGC TGCCATTGAA GCTGGATTTA ATCGCGCCTT CTGGACCATA TTCGATGCTA ACCTGACCAC CTTGATTGCC GCTTTCGTCC TGCTCTATTT CGGCAGCGGG CCTATCAAGG GGTTTGCCGT AACTCTTTCT ATAGGTATTA TTGCCAGTAT GCTGGTAGTA CTTACCTTTA CCCGCTATTT GCTGGTATTA TCCGCTGATT TGACCAAGAA TCATAAACTA TATGGGGTAT AA
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Protein sequence | MKLQKNFSVA VILAIIVALG ALSYFTYQPI LKNLNLGLDL RGGLHVVLEA QEKEGQKISA DTINKAVGIL RNRVDKLGVS EPLIYPQGER RVVVELAGID DPEEAVNIIK NTAELEFWDE SGKVLVTGKH LKEAQARAGS EGQGFEVAID FDKEGAKLFA DATTANVNKP LMIVIDGKVI SAPTVSGPIT DGSARITGNF TAKEAENLAV LLRSGALPVS FKILEKRTVG PTLGSDSLSK SVKAGIAGLI AILIFMLGYY RLPGFIADIS IVLYSILVLG TMTLFGAVLT LPGIAAFVLS IGMAVDANII IYERIKEELR WGKTLKAAIE AGFNRAFWTI FDANLTTLIA AFVLLYFGSG PIKGFAVTLS IGIIASMLVV LTFTRYLLVL SADLTKNHKL YGV
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