Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swol_1215 |
Symbol | |
ID | 4282479 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
Kingdom | Bacteria |
Replicon accession | NC_008346 |
Strand | - |
Start bp | 1406860 |
End bp | 1407408 |
Gene Length | 549 bp |
Protein Length | 182 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638138089 |
Product | isochorismatase family protein |
Protein accession | YP_753895 |
Protein GI | 114566741 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1335] Amidases related to nicotinamidase |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00883088 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGAGAAGT TCCGCTTGCG TAGAGATGAT AGCGTATTAA TGATTATTGA CCTGCAGGAA AGACTGATGC AGGCCATGAA AGATCGGGAG AGGGTATATA AGAATACCAA TCTACTTTTA GCAACAGCAC GGGAGTTCGA TATTCCGGTA GTTTTGAGCG AACAATACCC CAAGGGACTG GGACCCACCG TCAACGAAAT CAAGGATAAT CTTACTTCAT ATCATTATTT GGATAAAACC TGCTTTTCTC TTTGTAACCA GGAAGCTTAT ACTATACTGG ATAAGATCGG CAAACATACT ATTATTGTAA CCGGAAGCGA GACACATGTA TGTGTGTTTC AAACCGTGCG GGATTTACTA GAATCGGGCT TTAATGTTCA CCTGGTCAGG GATGCAGTCT GTTCTAGATT TGATGAAAAC TATAGAAATG CTCTGGCCTT AATGCGCGAC ATGGGAGCCA TAATTACCAA TACGGAGACC GTAGTCTTTG ACCTCTTGCA GGAAGCAGGA ACAAGTGCAT TCAAACATAT TTCACCTCTA ATAAAGTAG
|
Protein sequence | MEKFRLRRDD SVLMIIDLQE RLMQAMKDRE RVYKNTNLLL ATAREFDIPV VLSEQYPKGL GPTVNEIKDN LTSYHYLDKT CFSLCNQEAY TILDKIGKHT IIVTGSETHV CVFQTVRDLL ESGFNVHLVR DAVCSRFDEN YRNALALMRD MGAIITNTET VVFDLLQEAG TSAFKHISPL IK
|
| |