Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swol_1146 |
Symbol | |
ID | 4283502 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
Kingdom | Bacteria |
Replicon accession | NC_008346 |
Strand | + |
Start bp | 1326454 |
End bp | 1330164 |
Gene Length | 3711 bp |
Protein Length | 1236 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638138019 |
Product | ATP-dependent exoDNAse beta subunit |
Protein accession | YP_753827 |
Protein GI | 114566673 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
TIGRFAM ID | [TIGR02785] recombination helicase AddA, Firmicutes type |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCCATT GGACCATAGA ACAGGAAGAA GCAATAAATG CGCGTAATAG CAACCTCCTG GTAGCAGCCG CCGCCGGTTC GGGAAAAACT ACGGTTCTGG TGGAACGGAT AATTCAACTT GTCCTTCGTG ATCGAATTGA TATCGATCGC CTGCTTATAG TAACTTTTAC CCAGGCCGCC GCCGGAGAGA TGCGCGAAAG AATCAACGCC GCCTTTTTTA AAGAACTGGA GAAAGGAAGA GAAGACGGGC ATCTCAGAAG GCAACTCTAT TTGTTAAATC GCTCCTCCAT CAGTACCATT CATGCCTTCT GCAGCGATGT AGTACGGCAG CATTTTCACC TGGTTAATAT TGATCCTCAT TTCAGAATTG CCGATAGTAC TGAGACTGAA TTGATTAAGA TGGAAGTCCT GGAAGAGCTT TTGGATGGGG AGTACGAAAA GGGGAATGAT GGTTTTCTGG ATTTGGTGGA GGCGTTCGGC AGCAATAAGG ATGATAAACC GCTGGAAGCT CTTATATTAC GCTTACACAG CTTTATTCAG AGCCATCCCC AGCCGTTAAG CTGGTTAGAG GAGAAAATTG ATAATCTGGC TCTGGGTGAA GATAATTGGG CGGAAAATCC CTGGGCCAGT GAGCTGAGCC AACAAATAAA GATAGAACTA TCTGCTGCCC AGGATATTTT AAATCAAGCC CTCAAGCTCA GCAATAAAGC CGGTGGACCC AGGGGATATC TTGAAGCTAT TGAAAGTGAT CAGAAATGGG TTGAGCTTTT GCTAAAGGCA GCGGATCAGG GCCTGCCTGT CCTATATTCC TGCCTGCAGC AACTCAGTTT TACCCGCCTG GGGAGAGTTT CCCGGGATGT GGATGAAAAC CTTAAGAATC AAGTAAAGAT TCTCCGGGAT GAAAGCAAAA AAATACTTAA CGCTATAAAT AGTTTGCTGG GCCGTGATCC GCTGGAATAC CTGCAGGATT TAAATGAAAT CTACTCCCTT ATGAAATACT TGGGGGAGAT CATACAAAGT TTTGCGGAAA TTTACCAGGA AAAGAAAAGA GAGAAAGGCA TAGTCGATTT CAATGACCTG GAGCATTTGG CTTTGCAGAT CCTGAGTAAT GAAGCAGTAG CTCGGGAATA CCGGGATTAT TATAGTTACC TATTTATTGA TGAATACCAG GATAGTAATC TGGTACAAGA GACTATACTA AACTATATCA AAAAAGAAGA TAACCTGTTT ATGGTGGGGG ATGTCAAACA GAGCATCTAT CGCTTTCGAT TGGCTGATCC CTCTTTGTTT TTAGAGAAAC AAAAATCTTA CCCCTTGCAA GATGGCAGCG TAAACAGAAG GGTTGATCTT AATAAGAATT TCCGGAGTCA TCCGGAAATA CTCAATGCCG TAAATTATAT TTTCCGTCAT TTAATGTCAG AAGAACTGGG GGAAATAGAT TATGATGAAA AATCCTATCT CTATCCCGGT CTTAACACTG GCCAGGAGCT AAAATACCAA GAAATAGATA AAGCATCCAG CCAGGAAGGA AAGGAGAAAG AGAATACAGC TAAGAGGGTG GAGATCTGTA TACTGGAAAA CAACCCGGAT CTTATTACCA AGTTAGAGGA GAATGAAACG GAAGAACGAG AAATCCCGGG TGAAGCGGAA AATGATTTTA TTGAGCGCAT AATTGAAATG GATAATACGG AAATAGAAGC CCTCTTAATT GCCCAAAAGA TCAGACAGCT CATACAGGAA GATATTTATG ACCCTGAGCT ACAATGCATG AGAAAAATAG AATACCGGGA TATGGTAATA TTGCTGCGCG CTACTCGAAA CTCTGCCGGG ATATTCATGG AACAGTTAAG CGCAGAAGGC ATACCGGTTT ATGCTGATGC CAGTTCGGGT TATTTTGATA CTTTAGAGCT GAATCTGTTT ATAAACCTTT TGCGCTTAAT TGATAATAAA AGACAGGACA TAGCTCTTCT GAGTGTGATG CGCTCTCCTA TAGGTGGATT TAGTATTGAC GATTTTATTA AGATCAGGAC CAAGCTGATT CCCCGACGCG AAAAGCAACC CTATTCTTTT TATGAGGCTA TGGAGTTTTA TATGGAAGAT AATAATGATG ACTTGAAGGA TAGATTAGTG TTCTTCATAC AGCGCCTGAA GGAGTGGGAA TTGGAGTCGC GTATTATGGC ATTAGATGAA TTTATGGGGA AGCTCTTCAT GGATACCGGT TATTACTACT ATGCCGGGGC TATGCCGGGG GGGGGGCAAC GCCAGGCCAA CCTCAGAATT CTGCTGCATC GGGCGCGAGA ATTCCAAAAG AGCTCTTTTA AAGGCCTGTT TAGTTTCATA AAATACATAG AAAAAATCAA GTCCAGTGGG AGTGATATGG GTAATGCCTG CATTATCGGG GAGAACGATA ATGTAGTACG CATTATGAGC ATCCACAAGA GCAAGGGCTT GGAGTTCCCA GTGGTTATTC TGGGTGGATT GGGCAAAAAT TTTAATATTA GGGATAGCAA CGAAAATGTT TTGTTGCACC GGAAGCTGGG AATAGGCCCT CGTTATATCA ATACCCAGCT AAGAACCTAT CACGATACCA TTGCCCGCCT GGCCATTAAG AACCGGATAA AATTGGAGAA CCTGGCTGAA GAAATGAGGA TACTCTATGT GGCTTGTACC CGCCCTCAAG AAAAGTTAAT TATGGTGGGA ACTACCCGCC AACTGGAAAG TGCCTGGCGA AGATGGAGCC AGCCAGTAAA CTCCTATAAC CAGTCCCGGG CCAGGAGTTT TCTGGATTGG CTTATCCCCA TTATTATGCG ACATAAAAAA GAGGGGCAGT ACCTGCGGGA AATAGCCGGA GGAGATTGGG ACAGGGAAAT ACTATGGGAA GATGAATCCA GGTGGAAAGT TAAGCTTATC AGTCCCTGGC AGTTAACAGC TGAGGAAATA AGGAAAAAGG AAGAAAAGTA TGAATGGGAG AGATTATTAG AACAAGGGGG TTATTCCTGC CCTTCTGCTG AAAGTGAAGA AATTATAAAG CGGTTGAACT GGAAATATCC TTACCAGGAA GCAGAAAATA TTCCGGCCAA ACTATCCGTA AGCCAGGTCA GCCAGATTAG CAGCGGTTAT TTGGAGGATG GAGCAGCTGA TACTTTTCTT ACCCGGGTTC CCGCTTTTCT AAGCGGAGAA AAAGACAAGA AAACTAGGCT CAGCCCAGCG GATAAAGGCA GCATTGTCCA TCTGGTAATG CAAAATATTG ATTACAGGCG AGTTAGCCGG GAGGATAGTA TTAATCAACA GCTGGGCGAG ATGGTGGAAA GGGAAATCTT AACCTCGGAA CAACTTGCCG TAGTTGAGGT TAATAAAATA TGGCGATTCT TCCAAACAAA GCTGGGACAA AGGGTATTAC AGGCAAAATG GCTATTTCGC GAAGCACCTT TTAATCTGCT CATAGCAGCC AGCGAGGTTT TTCCTGCTTT GGAAAGCCAG GAAGAACTTT TGATTCAGGG GATTATAGAC CTGTATTTTT ATGAGGGTGA AGATATTGTT CTGCTCGATT TTAAAAGCGA TATCGTTCAC CATAAAAGTG AGGAGGAAAT CTTAGCTCCC TACCGGGTAC AACTCAAACT CTACAAGAGA GCCCTGGAGA ATATCACCGA CCACAGGGTC AAGGAGTCTT ATCTCTACTT TTTTGACTTG AACCGTGCAA TCAGAGTTTA G
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Protein sequence | MAHWTIEQEE AINARNSNLL VAAAAGSGKT TVLVERIIQL VLRDRIDIDR LLIVTFTQAA AGEMRERINA AFFKELEKGR EDGHLRRQLY LLNRSSISTI HAFCSDVVRQ HFHLVNIDPH FRIADSTETE LIKMEVLEEL LDGEYEKGND GFLDLVEAFG SNKDDKPLEA LILRLHSFIQ SHPQPLSWLE EKIDNLALGE DNWAENPWAS ELSQQIKIEL SAAQDILNQA LKLSNKAGGP RGYLEAIESD QKWVELLLKA ADQGLPVLYS CLQQLSFTRL GRVSRDVDEN LKNQVKILRD ESKKILNAIN SLLGRDPLEY LQDLNEIYSL MKYLGEIIQS FAEIYQEKKR EKGIVDFNDL EHLALQILSN EAVAREYRDY YSYLFIDEYQ DSNLVQETIL NYIKKEDNLF MVGDVKQSIY RFRLADPSLF LEKQKSYPLQ DGSVNRRVDL NKNFRSHPEI LNAVNYIFRH LMSEELGEID YDEKSYLYPG LNTGQELKYQ EIDKASSQEG KEKENTAKRV EICILENNPD LITKLEENET EEREIPGEAE NDFIERIIEM DNTEIEALLI AQKIRQLIQE DIYDPELQCM RKIEYRDMVI LLRATRNSAG IFMEQLSAEG IPVYADASSG YFDTLELNLF INLLRLIDNK RQDIALLSVM RSPIGGFSID DFIKIRTKLI PRREKQPYSF YEAMEFYMED NNDDLKDRLV FFIQRLKEWE LESRIMALDE FMGKLFMDTG YYYYAGAMPG GGQRQANLRI LLHRAREFQK SSFKGLFSFI KYIEKIKSSG SDMGNACIIG ENDNVVRIMS IHKSKGLEFP VVILGGLGKN FNIRDSNENV LLHRKLGIGP RYINTQLRTY HDTIARLAIK NRIKLENLAE EMRILYVACT RPQEKLIMVG TTRQLESAWR RWSQPVNSYN QSRARSFLDW LIPIIMRHKK EGQYLREIAG GDWDREILWE DESRWKVKLI SPWQLTAEEI RKKEEKYEWE RLLEQGGYSC PSAESEEIIK RLNWKYPYQE AENIPAKLSV SQVSQISSGY LEDGAADTFL TRVPAFLSGE KDKKTRLSPA DKGSIVHLVM QNIDYRRVSR EDSINQQLGE MVEREILTSE QLAVVEVNKI WRFFQTKLGQ RVLQAKWLFR EAPFNLLIAA SEVFPALESQ EELLIQGIID LYFYEGEDIV LLDFKSDIVH HKSEEEILAP YRVQLKLYKR ALENITDHRV KESYLYFFDL NRAIRV
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