Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swol_0254 |
Symbol | |
ID | 4281433 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
Kingdom | Bacteria |
Replicon accession | NC_008346 |
Strand | + |
Start bp | 295471 |
End bp | 297276 |
Gene Length | 1806 bp |
Protein Length | 601 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638137149 |
Product | excinuclease ABC, C subunit |
Protein accession | YP_752975 |
Protein GI | 114565821 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0322] Nuclease subunit of the excinuclease complex |
TIGRFAM ID | [TIGR00194] excinuclease ABC, C subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTGATG AGATGCTGAA GGAAAGATTA AAAAAGGTGC CGCTCCAACC GGGGGTATAC TTGTTCAAAA ACCAGGAGGG GCAGGTGCTC TATGTGGGAA AAGCCCGGGT TCTTCGCCAG CGAATGCGCT CCTATTTTCA AGCCCCGGAG CGAATGCATC CCAAGGTAAA GGCGATGATG GCCTGGGTAA GTGATTTTGA CTTTATCGTC ACCCACAGTG AAATGGAAGC TCTCATTCTG GAAAACAACC TTATAAAAAG CTATAAGCCC AGGTATAATA TCGATTTGCG CGATGATAAA AGCTATCCTT ATATCAAAGT CACTGTCGCC GATAAATTTC CGCGGGTTTA CCTGGCCCGG GAAAAAAAAG ACGGAGTATC GCGCTACTTT GGACCTTATA CCGATGTTAC TTCCCTGCGC GATACGCTCA AGCTGCTCAA CGGCGTTTTC GGGCTGCGCA GTTGCCGGAC TATGAAGTCC CGGCGCCGGC CCTGTCTCAA CCGCGACATG GGTAAATGTC TCTCCCCTTG CAGCGGTGAA ATTTCAGAAG AAGAATACAG CCAGAAGGTT CAAGCCTTAA TCACTTTTCT GGAGGGTGAT TTTCAAGAGA TAGTCCGGGA AAAAGAAAAA GAAATGGCTA TGGCCGCCAG GAGTCTGGAG TTCGAAAAAG CCGCCCGCCT GCGGGATCAG ATCCAATCCC TGCGCCAGTT GGGTGAAAAA CAAAAGATTG AGCTGGCTTC ACCCTATGAA CTGGACCTGG TGGGGATGCT AAGCGGGGAA AAGGAGAACC TGGTCCTGGT TTTTAAAGTC CGTTCGGGAA AGATAGTAGG CAAAGATACT TTCTGGCTGA AGCGCCCTAT CCAGGAAGAT GAGAATGAGG CCATGGAATT TTTTATTAAA CACTATTATG ATGAAAACCC TGATATTCCA CCGGAGATAC TCTTGAGCCA CCTGCCTTCT GAGTCCAAAC TGGTGGAGGC CTGGCTGAAA TCCAGGGTCT CCCACCGGGT AGAACTCCGG GTTCCGCAAA GAGGAGAAAA GAAACAGGTT CTCAATATGC TGCTGGAAAA TGCTCGTTTA CTCCTGGAGG AAAAGCAGCG GGAAGAGAAT AAGCAGCTCG CCGCTCTCTC GCATTTGGCG CGGGTTCTGG ACCTGGAAGT GGTGCCTAAT CGCCTGGAAT GTTTTGATGT ATCTCATCTG GCCGGGGAGG AAACAGTGGC CTCTATGGTG GTTTTTGTCG GAGGCCAACC GGAGAAAAAG GCTTATCGCC ATTTTAAAAT CAGAACTCAA CAGAATAATG ATACTGCCTC ACTGGCTGAA ACCGTTAGAA GGCGTTTGGA GAATGCCCGC CAGGCTAATC CAGCTTTTTT GCCGGAGCCG GATTTAATAC TGGTCGATGG TGGATTAGGA CAGGTTAATG CCGTAGCAGC AGTTTTGCAG GAAATGAATC TGGATATCCC GCTGTTTGCT TTGGCTGAAA AGAATGAGGA GATATACCGG CCAGGTAAAA GCCAGCCACT GGTATTGGCG GCCCGGGATA ATGGACTGCA ATTGCTGCAG AGGCTTCGGG ATGAAGCCCA TCGTTTTGCT ATTGAATATA ACCGGAAGAG AAGGGCAAAA AAAATCAGGT CTTCTGCTCT GGACGAAATA CCGGGAATAG GGAAGCAGAG AAAGAAGAAC CTGCTGGTTC ATTTCACTTC GGTGGCCAAA ATTAAGGAAG CTTCACTGGA TGAAATAGCG GCCGTTCCGG GAATGAACCG GAAAGCGGCA CTGGCGGTAA TAGAGTTCTT CCATAATCAG GACTGA
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Protein sequence | MGDEMLKERL KKVPLQPGVY LFKNQEGQVL YVGKARVLRQ RMRSYFQAPE RMHPKVKAMM AWVSDFDFIV THSEMEALIL ENNLIKSYKP RYNIDLRDDK SYPYIKVTVA DKFPRVYLAR EKKDGVSRYF GPYTDVTSLR DTLKLLNGVF GLRSCRTMKS RRRPCLNRDM GKCLSPCSGE ISEEEYSQKV QALITFLEGD FQEIVREKEK EMAMAARSLE FEKAARLRDQ IQSLRQLGEK QKIELASPYE LDLVGMLSGE KENLVLVFKV RSGKIVGKDT FWLKRPIQED ENEAMEFFIK HYYDENPDIP PEILLSHLPS ESKLVEAWLK SRVSHRVELR VPQRGEKKQV LNMLLENARL LLEEKQREEN KQLAALSHLA RVLDLEVVPN RLECFDVSHL AGEETVASMV VFVGGQPEKK AYRHFKIRTQ QNNDTASLAE TVRRRLENAR QANPAFLPEP DLILVDGGLG QVNAVAAVLQ EMNLDIPLFA LAEKNEEIYR PGKSQPLVLA ARDNGLQLLQ RLRDEAHRFA IEYNRKRRAK KIRSSALDEI PGIGKQRKKN LLVHFTSVAK IKEASLDEIA AVPGMNRKAA LAVIEFFHNQ D
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