Gene Swol_0007 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwol_0007 
Symbol 
ID4281307 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophomonas wolfei subsp. wolfei str. Goettingen 
KingdomBacteria 
Replicon accessionNC_008346 
Strand
Start bp8470 
End bp9354 
Gene Length885 bp 
Protein Length294 aa 
Translation table11 
GC content50% 
IMG OID638136898 
Productpyridoxal biosynthesis lyase PdxS 
Protein accessionYP_752737 
Protein GI114565583 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0214] Pyridoxine biosynthesis enzyme 
TIGRFAM ID[TIGR00343] pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.328963 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGAAA AGGCAACATT AAAAAGCAAG ACCGATCTGG CCCAAAGGTT AAAAGGCGGC 
GTAATCATGG ATGTTACTAC TCCAGAGCAG GCCAAAATAG CTGAAGAGGC CGGAGCCTGT
GCGGTGATGG CCCTGGAGAG GGTTCCAGCC GACATAAGAG CAGCCGGAGG TATTGCCCGG
ATGGCTGACC CCAGTGTTAT CCTGCGGATT AAGGAGAAAG TTACTATTCC GGTAATGGCT
AAATGCCGGA TAGGGCATTT TGTAGAAGCC CAGATTCTGG AGGCACTGGG AATTGACTTC
ATAGATGAAA GTGAAGTTCT AACCCCGGCT GATGATAAAC ATCATGTAAA CAAGGACGCT
TTCCAGGTAC CCTTCGTTTG CGGAGCCCGT AACCTGGGTG AAGCCCTTCG CCGTATTGGC
GAAGGAGCGG CTATGATCAG AACCAAAGGA GAAGCGGGTA CCGGGAATGT AATTGAAGCG
GTTCGGCATA TCAGACAGGT CAATGAGCAT ATCAGGTGGG TCAGCAGCCT GCCAGCAGAA
GAACTAATGG CTGCAGCTAA AGAGCTGGGA GCACCATACG AATTGTTACA GGAAGTAGCA
CGGCTAAAAG GCTTGCCGGT AGTAAATTTT GCCGCCGGGG GTATAGCTAC TCCGGCTGAT
GCAGCTATGA TGATGCAGCT GGGTTGTGAT GGAATATTTG TGGGTTCCGG TATATTCAAA
TCAGGTGACC CTATGAAGAG AGCCCGGGCC ATAGTAACCG CTACTGCCTA TTATCAGGAT
CCTGTAGTTT TGGCAGAAGT ATCACGGGAT TTGGGTGAAG CCATGGTGGG AATAGATATC
AGTACTATAA GGCCGGAAGA AAGAATGCAG GAACGCGGCT GGTAA
 
Protein sequence
MEEKATLKSK TDLAQRLKGG VIMDVTTPEQ AKIAEEAGAC AVMALERVPA DIRAAGGIAR 
MADPSVILRI KEKVTIPVMA KCRIGHFVEA QILEALGIDF IDESEVLTPA DDKHHVNKDA
FQVPFVCGAR NLGEALRRIG EGAAMIRTKG EAGTGNVIEA VRHIRQVNEH IRWVSSLPAE
ELMAAAKELG APYELLQEVA RLKGLPVVNF AAGGIATPAD AAMMMQLGCD GIFVGSGIFK
SGDPMKRARA IVTATAYYQD PVVLAEVSRD LGEAMVGIDI STIRPEERMQ ERGW