Gene Swit_5353 details

Gene Information

• Locus tag: Swit_5353
• ID: 5195625
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sphingomonas wittichii RW1
• Kingdom: Bacteria
• Replicon accession: NC_009507
• Strand: +
• Start bp: 260749
• End bp: 264180
• Gene Length: 3432 bp
• Protein Length: 1143 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 640579280
• Product: multi-sensor hybrid histidine kinase
• Protein accession: YP_001260228
• Protein GI: 148550789
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase

Plasmid Coverage information

• Num covering plasmid clones: 31
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 20
• Fosmid unclonability p-value: 0.385348
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTTGGGGA AAAAGATCGC GGCCGTGGGC ACGCCGCAGC GGAAGAATAA CGGGCTCATT 
GCCGGTCTGA TCTTGGGGCT GGCTTTCTTC CTGATCAGTA CCTGGCTTGC CTTTTCGAAT 
ATCCAGGCGC TCCGCGAGGC CGACAAGGCC ATTCGCCATA CCCATGAAGT GCTGATCGCA 
CTCGACGAAG TTCTTTCCAC CGCCAAAGAC GCAGAGACGG GCCAGCGCGG CTATCTGCTC 
ACCGGGACCA ACGCTTATCT CGAGCCGTAC CGGACCGCAG TCGCCGCCTT GCCCGCGCGG 
CTTGCGGCGC TGAAGGCGCT GACCGCCGAC AATCCGGTGC AGCAAGCGAG CCTGGGACCG 
CTCAACCGCC ATATCGATGC CAAGTTGGCT GAACTGCGCG AGACGATCGA ATTGCGGCGC 
ACGCAGGGCC TGACCGCTGC CATGGGGATC GTGACAAGCG ACCGCGGCAA GGGCGAGATG 
GACGCTATCC GCGCCCAGCT TGACGGCATG GCCCGCGAGG AAGTGCGCCT GCGGGAAGAG 
CGCATGGGCG ACATGACGGA CGCGGCGCGC GCGGCGATCA CTAGTGGCGT TGTTTCGGGT 
CTCCTGGGCT CCGCACTCAC CATCGCGATC TTCGTGCTGC TGCTCCGTAA TGGACGGGCG 
CGCGCGCGGC AGGAATGGCT GCAGTCCGGC GAAGTCGGCC TGTCCGAAGC GATGCGCGGG 
GACAAGTCCG TCGAACAGCT TGGCGAGGAC ATCTTGGCGT TCCTGGCCGA ACATACGGGG 
CTTTCGGGCG GTGCCCTGTT CAAGGGCGAG AGCGGCCACT TTAGGCGGGC GGCCGTGGTC 
GGGGTTCCGG CCGACGCCGA TATGCCCTCC TCCTTCAACC TCAAGGAGGG TTTGCTGGGC 
AAAGTGGCGG TCGACGGCAA GGCGCTGGTC CTGGAAGACG TGCCGGGGGG CTATCTGACG 
ATCGGCTCGG CTTTCGGTCG CGACAAGCCG CGCCATCTGG TCATCGTACC GGCCAAGGCG 
GACGCGCAGG TCAATGCGGT CTTGGAGCTC GGCTTCTTCA AGCCGGTCGA TCCCTTGGTG 
CTCGATCTCC TGGAGCGTGT CTCGCCGGCG ATCGGCATCG CCCTGCGCTC GGCGCGCTTC 
CGGGCCCGGC TCCAGGACGC GCTCGAGGAA ACGCAGCGCC AAGCTGGCGA GCTTCAGGCC 
CAGAGCGAGG AACTGCGCGT CTCCAACGAA GAACTCGAAG AGCAGGGCCG GGCGCTACGG 
GAATCCCAGG TTCGTCTGGA ACAGCAGCAG GTCGAACTCG AACAGACCAA CAGCCAGCTT 
GAGGAACAGG CGCAGACGCT GGAAACCCAG CGGGACGAAC TGGAGCGGGC CGGCGCGGCG 
CTGGGCGCCA AGGCGCACGA ACTCGAGCAG GCCAGCCAGT ATAAGTCGGA TTTCCTGGCC 
AATATGAGCC ACGAATTGCG CACGCCGCTC AATTCGCTGC TGATCCTCTC CAAGCTGCTG 
GGAGACAATT CGCAGGGCAA CCTCTCCGAC GAGCAGATCA AATATGCCAA TACGATAGAG 
TCTTCTGGCA ATGACCTGCT GACCCTAATC AACGACATTC TTGATCTGTC CAAGATCGAG 
GCAGGGCACA TCGAGATCCG TCCCGAAACC GTCGCGCTGC AGCGGCTGAC GGGCGATTTG 
CGGCGGACCT TCGACCCGCT TGCCGAGAAG AAGGGCCTTG GTTTCGACAT CAGCCTTTCC 
GATGACTGTG CCCGCACGAT CGAGAGCGAC CGGATGCGGC TCGAGCAGAT CCTCAAAAAT 
CTGCTGTCCA ACGCCTTCAA ATTCACCGAG CGCGGACAGG TGAGCCTCGC CATTGAGCGC 
GTGGATGATG CGTTCATCCG CTTCGCCGTC AGCGACACGG GCATCGGCAT TTCGGCCGAG 
CAGCAGGCGT CGATCTTCGA GGCCTTCCAC CAGGCCGACG CGACGATCAG CCGGAAATTC 
GGCGGGACGG GCCTTGGCCT TTCCATCTCT CGCGAGCTCG CGCGCCTGCT CGGCGGCCGG 
ATTGCGCTGG AGAGCCGCCC TGGCGAAGGC AGCACCTTCA CGCTCACCAT TCCACTGGCC 
TATGACGCCG TCGCCCAGCC GACCCGGCGG CGTTCCGACC CGGGTCCCTC GGCGGTCGCG 
GCGGCGCCCG CCATCCCTTT GCGTCCGGCG CCCGCGCCAT CGGCTTGGAG CCTGGAAGAC 
GACCGCGCCA GCCTGACCGA GGGCAATCGG GTTCTGCTCG TCATCGAAGA TGATGCGGTT 
TTCGCCCAGA TCGTCTGTGA GCTTTCACGC GAACTCGGCT TCCAATGCGT CATCGCCGGC 
AATGCGGAGG ACGCGATCAA ACATGCTCAC GAGTTCAAGC CGAGTGCGAT TGTTCTCGAC 
CTGGGTCTGC CGGACCAGTC CGGGCTTACC GTCCTTGACC GGCTGAAGCA TGACGATGAA 
ACGCGCCATA TTCCGATCCA TGTGATTTCG GCGGCCGACC AGAGCCAGAC CGCGCTGTCG 
CTCGGTGCGG TCGGCTACCA CATCAAGCCG GTCAAGCGCG AAGAGCTCGC GCAGGTGCTC 
GAGGGCCTGC AGGCGAAGCT TGCCTTGCGC ATGCGCCGGG TCCTCATCGT CGAGGACGAT 
GCGGTTCAGC GCGACGCAGT GGGTAAGCTT TTGGGCTCGG ACGATGTCGA GACGATCGGC 
GTGGGCACGG CCGCCGAATG CCTGGAACAG CTGCGGCGCG AGACGTTCGA CTGCATGGTG 
CTAGACCTGA CCCTGCCGGA CACCTCGGGG TTCGATCTGC TGGAAACGCT GAGCCAGGAG 
GGCGATCATG GCTTCCCGCC GGTCATCGTC TATACCGGGC ACGACCTCTC CGCCGACGAC 
GAGCAGCGGC TGCGGCGGTA TTCGAGTTCG ATTATCATCA AGGGCGCCAA ATCCCCTGAG 
CGGTTGCTCG ACGAGGTTTC CCTGTTCCTC CACCAGGTCG TCTCCGAGCT GCCGCCCGAG 
CGGCGGCGCA TGATCGAAAA GGCGCGTCAC CGCGATGCCG CGCTCGAGGG TCGGCGCATC 
CTCATCGTCG AGGATGATGT CCGTAACGTC TATTCCCTGT CGAGCGTGCT CGAGCCGCGC 
GGCGCGATCG TCCAGATCGC CCGCAACGGG CAGGAGGCGA TCGATGCGCT CGCCCAAGCC 
GGGGACGATG CGGCGAAGGC CGTCGACCTT GTGCTCATGG ACGTCATGAT GCCGGTCATG 
GACGGGCTGA CCGCGACGCG CGAGATCCGG GCCGATCCGC GCTGGACGAA GCTGCCGATC 
GTGATGCTGA CCGCGCAGGC CATGCCGGAC GATCAGCAAC GCTGCCTGGA AGCGGGCGCC 
AACGACTATA TGGCCAAGCC CATAGACGTC GATAAACTTT TGTCGCTGGT GCGCGTCTGG 
ATGCCCCGAT GA 

 

Protein sequence

MLGKKIAAVG TPQRKNNGLI AGLILGLAFF LISTWLAFSN IQALREADKA IRHTHEVLIA 
LDEVLSTAKD AETGQRGYLL TGTNAYLEPY RTAVAALPAR LAALKALTAD NPVQQASLGP 
LNRHIDAKLA ELRETIELRR TQGLTAAMGI VTSDRGKGEM DAIRAQLDGM AREEVRLREE 
RMGDMTDAAR AAITSGVVSG LLGSALTIAI FVLLLRNGRA RARQEWLQSG EVGLSEAMRG 
DKSVEQLGED ILAFLAEHTG LSGGALFKGE SGHFRRAAVV GVPADADMPS SFNLKEGLLG 
KVAVDGKALV LEDVPGGYLT IGSAFGRDKP RHLVIVPAKA DAQVNAVLEL GFFKPVDPLV 
LDLLERVSPA IGIALRSARF RARLQDALEE TQRQAGELQA QSEELRVSNE ELEEQGRALR 
ESQVRLEQQQ VELEQTNSQL EEQAQTLETQ RDELERAGAA LGAKAHELEQ ASQYKSDFLA 
NMSHELRTPL NSLLILSKLL GDNSQGNLSD EQIKYANTIE SSGNDLLTLI NDILDLSKIE 
AGHIEIRPET VALQRLTGDL RRTFDPLAEK KGLGFDISLS DDCARTIESD RMRLEQILKN 
LLSNAFKFTE RGQVSLAIER VDDAFIRFAV SDTGIGISAE QQASIFEAFH QADATISRKF 
GGTGLGLSIS RELARLLGGR IALESRPGEG STFTLTIPLA YDAVAQPTRR RSDPGPSAVA 
AAPAIPLRPA PAPSAWSLED DRASLTEGNR VLLVIEDDAV FAQIVCELSR ELGFQCVIAG 
NAEDAIKHAH EFKPSAIVLD LGLPDQSGLT VLDRLKHDDE TRHIPIHVIS AADQSQTALS 
LGAVGYHIKP VKREELAQVL EGLQAKLALR MRRVLIVEDD AVQRDAVGKL LGSDDVETIG 
VGTAAECLEQ LRRETFDCMV LDLTLPDTSG FDLLETLSQE GDHGFPPVIV YTGHDLSADD 
EQRLRRYSSS IIIKGAKSPE RLLDEVSLFL HQVVSELPPE RRRMIEKARH RDAALEGRRI 
LIVEDDVRNV YSLSSVLEPR GAIVQIARNG QEAIDALAQA GDDAAKAVDL VLMDVMMPVM 
DGLTATREIR ADPRWTKLPI VMLTAQAMPD DQQRCLEAGA NDYMAKPIDV DKLLSLVRVW 
MPR