| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5219 |
|---|
| Symbol | |
|---|
| ID | 5195707 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009507 |
|---|
| Strand | - |
|---|
| Start bp | 109320 |
|---|
| End bp | 110858 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640579147 |
|---|
| Product | signal transduction histidine kinase |
|---|
| Protein accession | YP_001260095 |
|---|
| Protein GI | 148550656 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2203] FOG: GAF domain
[COG3920] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.673975 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTACAAA CGAACATCTC CAGGGTCCCT AGCACGTCCG GCCGAAATTG GAGCGAGGAC
GAGCGCGTTG CCGCGTTGGA CCGCTATGAC ATTCTTGATA CGCCAACCGA GCCGATCTTT
GACGACATCG CCCGTCTGGC CTCCGAGGCG CTTGGGGCGC CGATCGCCGT GGTCAACCTT
ATCGCGACCG CGCGGCAGTG GTTCAAAGCC GAAATCAGCA TCGGCGCGCG CGAACTCCCT
CTGGAAGTCT CGATCTGCGC GCATGCGCTG CTCGAGGAGG ACATGATGGT GATCCCCGAC
ACACGGCTCG ATCCGCGGGT CGATTGCAAT CCCCTGGTTA CGGCCGAAGG TGGTCTTCGC
TTCTATGCCG GGGCGCTTCT CAAGACACCC GACGGTCTGC CCATCGGCAC GCTGTGCGTT
CTTGATCGGC AGCCTCGCCC GGAGGGCATC ACGCCCTTCC AGCGGCTCAC CCTCGAAGTG
CTGGCGCGCC AGGTCATGAC GCAGCTGGAA TTGCGCAGGT CGCTCAGCCA GCAGCAAGAA
ACGCTCGCGC AGCTCGCTGC GAGCGAGGAG CGGACCCGCC TTGCCCTTGA CGCAGGCGAA
CTCGGCGCCT GGGAATCGAC CCCGGCGCTG CGTTCGCTCA AATGGGACGC GCGCACCCGG
GAGTTGCTTG GCCACGAACC TGACGAAGCG CTCGACTATG AAACCTCGTT TCTCGCGCGG
GTTCATGCCG AGGATCGCGA GCGGGTCGCT GCCCTTATCG CCGAGGCGCT GGCCCCTGGG
GGCGCAGGCA CGGTCAGCGT CGAATATCGC ACGGTCAATC CTCGTGATGG CCGTGAGCGC
TGGATCCACG CCAAGGGCGC GCTTGCCGTA GGTCTGGGCG GCGAACAGAA GTTCGTCGGC
ACGGTGCGGG ACATCACCGC GGAAAAGGAT GCCGAGATGC ATCGGCGGCT GCTGACTGGC
GAGCTCCAGC ACCGGGTCAA GAATACGCTC GCCGTGGTAA ATGCCATCGT CCACCAGTCG
CTCCGCAGCG CGCCCTCGAT GGAGGAGGCG AGTACCGCGA TCGGGCAGCG CCTCCAGACC
CTGGGCGCCG CTTACGAGTT GCTAACCCGC ACCGACTGGA CGGTGGCGCC GATCGGCGCT
GTCGCCGAAG GAACAACGGC GCTTCATGGC GCTCGCACAG GCGCGATCCG GATTGCGGGG
CCTGACCTTC TTCTATCGGC ACGGGCCTCG CTGGCTCTGT CCATGTCCCT CCACGAGCTG
TCCACCAATG CGGTGAAATA TGGCGCCCTG TCGGTGCCGG GCGGGCAGGT CGACCTTACC
TGGACCATCG ATGCGGAAGA GGGAAAGTCA TTCCTCACGA TCTGCTGGGA GGAGCGAGGC
GGACCAACCG TATGCGCGCC CGAGCGAGGC GGGTTCGGCA CCCGCTTGAT GGCCAGCCTT
GCCAGCGATC TCGGCGGCAA GGGAGTCATC GACTATCAGC CGACCGGTGT CGTCTGGCGG
CATCGGGCTG ATCTGGCACG GATCACCGAA CCCGCTTGA
|
|---|
| Protein sequence | MVQTNISRVP STSGRNWSED ERVAALDRYD ILDTPTEPIF DDIARLASEA LGAPIAVVNL
IATARQWFKA EISIGARELP LEVSICAHAL LEEDMMVIPD TRLDPRVDCN PLVTAEGGLR
FYAGALLKTP DGLPIGTLCV LDRQPRPEGI TPFQRLTLEV LARQVMTQLE LRRSLSQQQE
TLAQLAASEE RTRLALDAGE LGAWESTPAL RSLKWDARTR ELLGHEPDEA LDYETSFLAR
VHAEDRERVA ALIAEALAPG GAGTVSVEYR TVNPRDGRER WIHAKGALAV GLGGEQKFVG
TVRDITAEKD AEMHRRLLTG ELQHRVKNTL AVVNAIVHQS LRSAPSMEEA STAIGQRLQT
LGAAYELLTR TDWTVAPIGA VAEGTTALHG ARTGAIRIAG PDLLLSARAS LALSMSLHEL
STNAVKYGAL SVPGGQVDLT WTIDAEEGKS FLTICWEERG GPTVCAPERG GFGTRLMASL
ASDLGGKGVI DYQPTGVVWR HRADLARITE PA
|
|---|
| |