| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5029 |
|---|
| Symbol | |
|---|
| ID | 5196085 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009508 |
|---|
| Strand | + |
|---|
| Start bp | 143823 |
|---|
| End bp | 145175 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640579461 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_001260409 |
|---|
| Protein GI | 148550979 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 52 |
|---|
| Plasmid unclonability p-value | 0.440555 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 0.789511 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCACGCT CAATGCACAA GCTTAGCCCT CGACGCGTCA CCACGCTGTC TGCGCCCGGA
TGGTATGGCG ATGGCGGCGG CCTTTACCTC CGCATCAAGA CCGATGGATC GAAGCGCTGG
GCATTCACCT ACGAGCGCAA TAAGCGCCGG CACGAGATGG GCCTTGGAGC CGTCGTGGAT
GTGCCGCTGG CAAAGGCGCG AGAAGAAGCG GCGGCGGCGC GGCAGCTTTG GATCGATGGT
CTCGACCCGA TCGAGCAGCG GCGAACCACC GGGCAGGCCG AGCCTGAGCG GAAGCCGGAG
GCCGTGCCGG AAACCGTGAA GCAGAGTGGT TCTCCGCTAT TCGGTCCCTT CGCAGAAGCC
TATATCGACA CCCAGGAAGA GGGATGGAAG AATCCCAAGC ATCGCCAGCA GTGGCGCAAC
ACGATCAAGA CGCACGGGAA ATCGTTGCTC ACCATTCCGG TTGATGTGAT CACCGTCGAC
GACGTGGTTG CAGTGCTACA ACCGATCTGG CGCTCGACTC CCGAAACCGC GGGGCGTTTG
CGTGGACGGA TTGAGAACAT CCTCGATGCG GCCAAGGCAT CGAAGCACAT CGCCGGCCCG
TGGGAGAATC CCGCACGCTG GCGAGGCAAT CTGATCCATC TATTGCACCG CCGCGGGAGG
AAATCTCAGG TGCGCCATCA TCCGGCGATA CCGTTTGAAG ATCTGCCCGA CTTCATCCTT
CGCCTGCGCC GTCGGCCGGC GCTCGTTGCA CGTGCGCTTG AGTTCACCAT TCTCTGCGCA
ACGCGTACCA ATGAGACGTT GCGCATGACC TGGTCCGAGG TGAATTTGGA CGATGCCGTA
TGGAATGTCG CCGCCGATCG CATGAAGATG GGCGTCGAAC ACCGCATCCC GCTGCCGGAT
CGCGTCGTCG AAATCCTTCG TGAGATCGCG AAGGGCACCA ACTGCGATCC GGGCACGTTC
GTGTTCGAAG GGCAAAAGAT AGGAAAGCCG CTCTCCCAGA TGTCGATGAC GATGGTGCTT
CGCCGGATAA AGCTTGGTCA TTATACCGTG CATGGCATGC GTAGCGCGTT TCGCGACTAT
ATGGGCGAAA TGACAAACCA CCCGGAATCG GTCGTGGAGC AGGCACTCGC CCATCAGATC
GGGGACGAGA CCACACGCGC CTACCGGCGA GGGGATGCGT TCCTAAAACG ACGCGCGCTG
ATGAAGGATT GGGAAGGGTA TCTCGATTCC AAAGCGGTGA AATCGAAACA GGCAAAAGGT
CGGCGTAAAC CAGATTCGGC GCGATTGGCC GCAAGCCGTA ATCACCATGG CTTGGGAGAG
GATCTGCGTA GGGAAATCGT GACAGCGAGT TAA
|
|---|
| Protein sequence | MPRSMHKLSP RRVTTLSAPG WYGDGGGLYL RIKTDGSKRW AFTYERNKRR HEMGLGAVVD
VPLAKAREEA AAARQLWIDG LDPIEQRRTT GQAEPERKPE AVPETVKQSG SPLFGPFAEA
YIDTQEEGWK NPKHRQQWRN TIKTHGKSLL TIPVDVITVD DVVAVLQPIW RSTPETAGRL
RGRIENILDA AKASKHIAGP WENPARWRGN LIHLLHRRGR KSQVRHHPAI PFEDLPDFIL
RLRRRPALVA RALEFTILCA TRTNETLRMT WSEVNLDDAV WNVAADRMKM GVEHRIPLPD
RVVEILREIA KGTNCDPGTF VFEGQKIGKP LSQMSMTMVL RRIKLGHYTV HGMRSAFRDY
MGEMTNHPES VVEQALAHQI GDETTRAYRR GDAFLKRRAL MKDWEGYLDS KAVKSKQAKG
RRKPDSARLA ASRNHHGLGE DLRREIVTAS
|
|---|
| |