Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4943 |
Symbol | |
ID | 5196003 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009508 |
Strand | + |
Start bp | 51516 |
End bp | 52253 |
Gene Length | 738 bp |
Protein Length | 245 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640579381 |
Product | hypothetical protein |
Protein accession | YP_001260329 |
Protein GI | 148550899 |
COG category | [S] Function unknown |
COG ID | [COG4185] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 42 |
Plasmid unclonability p-value | 0.00429148 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGACCTCTG CGATCGAGGC GATCCGACAG GTTCGCCAGA CACAGGAAAA GCGTAAGAAA CCGCTCGCGA TCGTGCTCGC TGGCCATAAT GGTTCGGGCA AATCGACATT GTGGCGCCGT AGCCTCGCCG ATGAATTGCA GATGCCGTTG GTCAATGCCG ACCGCATGAT GCTGTCGATC CTGCCCGAGC AGGCGAGCGA CGGCGCGCTC CCGTCCTGGG CGGCGACACT GCGCGATACC GATCAGAGCT GGATGAAGGT GTCGCAGCAG GGCGTACAAG CCTTTGTCGG TCATGCGATG AACGCGAAGG TACCATTCGC AATGGAAACG GTGTTTTCCC ACTGGCAGGC GCTGGGCGAC GGCACCTTCG AATCCAAGAT CGACCAGATT CGCCAGATGC AGACGGCGGG GTATTTCGTT CTCCTGATCT TTGTGGGACT GGCGAGCGTC GAGCTCTCGA TCGGCCGTGT CCAGACGCGG GTTCAGGAAA ATGGCCATGC GGTGCCCGAG AATAAATTGC GCGAGCGGTT CCCGCGGACC CAGATGGCGA TCGCCGAAGC GATAAAGGTC GCCGACGCCT CCTTGCTCGC GGATAACAGC CGGACGCCGG CACAGGCCTT CACCGTCTGC CGGGTCCAGA TCGAGGAGCG CGAGATCTTT GACCTAAGGG CCGGCGAGAG AACCACCCCG AGCGTGATCT CGCGCTGGCT CGAGATCGTC AGCCCCCGTG TCGGCTGA
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Protein sequence | MTSAIEAIRQ VRQTQEKRKK PLAIVLAGHN GSGKSTLWRR SLADELQMPL VNADRMMLSI LPEQASDGAL PSWAATLRDT DQSWMKVSQQ GVQAFVGHAM NAKVPFAMET VFSHWQALGD GTFESKIDQI RQMQTAGYFV LLIFVGLASV ELSIGRVQTR VQENGHAVPE NKLRERFPRT QMAIAEAIKV ADASLLADNS RTPAQAFTVC RVQIEEREIF DLRAGERTTP SVISRWLEIV SPRVG
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