| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4758 |
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| Symbol | |
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| ID | 5197121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 5234759 |
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| End bp | 5238136 |
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| Gene Length | 3378 bp |
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| Protein Length | 1125 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640584314 |
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| Product | transglutaminase domain-containing protein |
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| Protein accession | YP_001265233 |
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| Protein GI | 148557651 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG1305] Transglutaminase-like enzymes, putative cysteine proteases
[COG4196] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.446948 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0794526 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAAAG CTCCAACTCT TCATTGCACC GCACAACGGG ATGTGCTGAT CCTTCCATCC
ATGATTCAGG CGGCGCTGCA CCATCAGACG GTCTACCGCT ACGACCACCC GGTCCCGCTG
GGCCCCCAGC TCATCCGCCT GCGGCCGGCG CCGCACAGCC GGACGGCGGT GAACAATTAT
TCGCTGCGCA TCGCCCCGGA AAACCACTTC ATCAACTGGC AGCAGGACCC GCACGGCAAC
TGGCTGGCGC GGCTGGTGTT TCCCGAACGG ACCGACGAAT TCTCGATCAC CGTCGACCTG
ATCGCCGACC TGGTGGTGGT CAATCCGTTC GACTTCTTCG TCGAGGATTA TGCCGAGCAG
CGGCCCTTCG CCTATGCGCC CGCGATCGCC GCCGACCTCG CCGCCTATTT CGAGATCGAG
CCGCAAGGGC CGCTGTTCGA CGGATTCGTC GCGCCCTTCG TCGATCTCCG CGCCCGCACG
ATCGACTTCC TCGTCGACCT CAACGTCGCG ATCCATCGGC GGGTCAACTA TGTCATCCGC
ATGGAGCCGG GCGTGCAGAC GCCCGAGGAG ACGCTGGCGG CCGGCACCGG AAGCTGCCGC
GATTCGGCCT GGCTGCTGGT CCAGGTCGCC CGGCGCCTCG GCTTCGCCGC GCGTTTCGTC
TCTGGCTATT CGATCCAGCT CACCCCCGAC ATCGTCCCGA TCGACGGACC CAAGGGCGTC
GCCGCCGACG TCTGCGACCT CCATGCCTGG GCGGAGGTCT ATGTGCCCGG CGCCGGCTGG
ATCGGAATGG ACGCGACCTC GGGCATGTTC GCGGGGGAGG GGCACATCCC GCTCGCCGCG
ACTCCGCACC ACCGGTCGGC GACCCCGATC GAGGGCGCGC TGCTCGAACC CGCGCATGTC
GATTTCCATT TCGACATGGA CGTCCAGCGC ATCGCCGAGG CGGTGCGCAT CACCAAGCCG
TTCACCGACG CCCGCTGGGA GGCGCTCGAC GCGCTGGGCG AGGCGGTCGA CGCCGATCTG
GTCGCGCAGG ACGTGCGGCT GACGACGGGC GGGGAGCCGA CCTTCGTCGC CCTCGACGAT
CCGGAGGCGC CCGAGTGGAA CGGCGACGCG GTCGGCCCGA CCAAGGCCGG CTATGCCGAC
CGGCTGATCC GCAGGCTGCG CGAGCGCTTC GCGCCGGGCG GCCTGCTCCA CCATGGCCAG
GGCAAATGGT ATCCGGGGGA GAGCCTGCCG CGCTGGGGCT ATTCGGTCTA TTGGCGGACC
GACGGCGTGC CGGTGTGGAA CGACGCCGCG CTGATCGCGG GCGAGGGGAC CGATGGGGCG
GGTGCGACGG TCGGGGCCGA GCAGGCCGAG GCCTTCCTGT CCGCGATGGC CGAGGGGCTG
GGCGTCGGCG CGGCGATGGT CGCGCCGGCC TATGAGGACC CGGTCGACTG GTCGGTGAAG
GAGGCGCAGC TTCCCGCCAA TGTCGACCCG AGCGATCCGA AGATCGACGA TCCCGAGGCG
CGCGCCCGCA TGGTCAAGGC GTTCGAGCGG GGGCTGGGCA GCCCGGTCGG CTATGTCCTG
CCGATCCAGC GCTGGAATGC GCGGCAGGCG GCGACGCCGG GGCGCTGGCG GTCGGAACGC
TGGAGCCTGC GGCGCGGCAA GCTGTTCGCG GTGGCCGGCG ACAGCGCGCT CGGCTATCGC
CTGCCGCTCG GATCGCTGCC GCATGTGCCG GCCGCCGACT ATCCCTATCT CCACCCGCGC
GACACCACCG AGCCGCGCGA GCCGATGCCC GACTTCTACC GCCAGCGGAT CGAGGCGGTC
GCGCCCGCCG CCGGCGCCGC CGCGCAGGAG CGGCAGGAGC AGGTGTTGAT CGAGGGCGCC
GTCCGCACCG CGATCACGGT CGAGGCGAAG GACGGTCATG TCGCGGTGTT CCTGCCCCCG
ACCGAGCGGC TCGAAGACTA TCTGGAGCTG ATCGCCGAGA TCGAGGCGGC CGCCGCGCGC
ACCCGCATCC CGGTGCGGGT CGAGGGCTAT GCGCCGCCGC CCGATCCGCG CCTCAACCTG
CTGAAGGTGA CGCCCGACCC CGGCGTGATC GAGGTCAACG TCCAGCCGGC GGCGAGCTGG
CGCGAGACGG TCGAGATCAC CACCGGCCTC TACGATCTGG CGCGCGAGAC CGGGCTGACC
GCCGACAAGT TCATGGTCGA CGGCCGCCCG ATCGGCACCG GCGGCGGCAA CCATATCGTG
CTCGGTGGCC GCTCGGTGAA CGATTCGCCC TTCATCCGCC GCCCCGACCT GCTCAAGAGC
TTCCTGCTCT ACTGGCAGCG GCATCCCTCC CTCAGCTATC TCTTCTCGGG GCTGTTCATC
GGCCCGACCA GCCAGGCGCC GCGCATCGAC GAGGCGCGCC ACGACGGCCT CTACGAACTG
GAGATCGCGC TGGCGCAGGT GCCCGCGCCG GGCGAGGGCG AGGCGCCGCC GCCCTGGGTG
GTCGACCGGC TGTTCCGCAA CCTGCTGGTC GACGTGACGG GCAACACCCA CCGCACCGAG
ATCTGCATCG ACAAGATGTT CTCGCCCGAC GGGCCGACCG GCCGGCTCGG CCTGCTCGAG
TTCCGCGGCT TCGAGATGCC GCCCGAGCCG AAGATGAGCC TGGCCCAGCA ATTGCTGCTG
CGCGCGCTCA CCGCCTGGTT CTGGCGCGAG CCGCAGAAGG GCGGGCTGGT CCGCTGGGGC
ACCGCGCTGC ACGACCGCTT CCTGTTGCCG CATTTCGTCT GGGCCGATTT CCTGGAGGTG
CTCGGCGACC TGCGCCATGC CGGCTACGGC TTCGATCCCG CCTGGTTCGA GGCGCAGCGC
CAGTTCCGCT TCCCGGTCCA CGGCACCGTC TCGGCGGGCG GGGTGACGCT GGAGGTCGCG
CATGCGCTGG AGCCGTGGCA CGTGCTGGGG GAGACCGGCG TGATCGGCGG CACCGTGCGC
TATGTCGACA GCTCGACCGA GCGGCTCCAG CTGCGCGCCA CCGGGCTGGT GCCGGGCCGC
CACGTCGTCG CGGTCAACGG CCGCGCGGTG CCGATGACGC CGACCGGGGT GCCCGGCGAG
GCGGTCGGCG GGGTGCGCTA CAAGGCGTGG AAGCCGGCCA ACTGCCTCCA CCCGCTGCTC
GACGCCGACG CGCCGCTGAC CATCGACGTG CTCGACAAGT GGAACGAACG TTCGCTAGGC
GGGTGCGTCT ATCATGTCGC GCATCCGGGA GGCCGCAACT ATGACACCGT GCCGGTCAAC
GACCTGGAGG CCGAGGCGCG GCGGCGGGCG CGGTTCCAGG ACCATGGCCA TACGCCGGGC
CCGGTGACGA TCCCGATGCC GGAACGGGCG AGCGAGTTCC CGATGACGCT CGACCTGCGC
GTCCCGCCGG GCTGGTAG
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| Protein sequence | MTKAPTLHCT AQRDVLILPS MIQAALHHQT VYRYDHPVPL GPQLIRLRPA PHSRTAVNNY
SLRIAPENHF INWQQDPHGN WLARLVFPER TDEFSITVDL IADLVVVNPF DFFVEDYAEQ
RPFAYAPAIA ADLAAYFEIE PQGPLFDGFV APFVDLRART IDFLVDLNVA IHRRVNYVIR
MEPGVQTPEE TLAAGTGSCR DSAWLLVQVA RRLGFAARFV SGYSIQLTPD IVPIDGPKGV
AADVCDLHAW AEVYVPGAGW IGMDATSGMF AGEGHIPLAA TPHHRSATPI EGALLEPAHV
DFHFDMDVQR IAEAVRITKP FTDARWEALD ALGEAVDADL VAQDVRLTTG GEPTFVALDD
PEAPEWNGDA VGPTKAGYAD RLIRRLRERF APGGLLHHGQ GKWYPGESLP RWGYSVYWRT
DGVPVWNDAA LIAGEGTDGA GATVGAEQAE AFLSAMAEGL GVGAAMVAPA YEDPVDWSVK
EAQLPANVDP SDPKIDDPEA RARMVKAFER GLGSPVGYVL PIQRWNARQA ATPGRWRSER
WSLRRGKLFA VAGDSALGYR LPLGSLPHVP AADYPYLHPR DTTEPREPMP DFYRQRIEAV
APAAGAAAQE RQEQVLIEGA VRTAITVEAK DGHVAVFLPP TERLEDYLEL IAEIEAAAAR
TRIPVRVEGY APPPDPRLNL LKVTPDPGVI EVNVQPAASW RETVEITTGL YDLARETGLT
ADKFMVDGRP IGTGGGNHIV LGGRSVNDSP FIRRPDLLKS FLLYWQRHPS LSYLFSGLFI
GPTSQAPRID EARHDGLYEL EIALAQVPAP GEGEAPPPWV VDRLFRNLLV DVTGNTHRTE
ICIDKMFSPD GPTGRLGLLE FRGFEMPPEP KMSLAQQLLL RALTAWFWRE PQKGGLVRWG
TALHDRFLLP HFVWADFLEV LGDLRHAGYG FDPAWFEAQR QFRFPVHGTV SAGGVTLEVA
HALEPWHVLG ETGVIGGTVR YVDSSTERLQ LRATGLVPGR HVVAVNGRAV PMTPTGVPGE
AVGGVRYKAW KPANCLHPLL DADAPLTIDV LDKWNERSLG GCVYHVAHPG GRNYDTVPVN
DLEAEARRRA RFQDHGHTPG PVTIPMPERA SEFPMTLDLR VPPGW
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