Gene Swit_4726 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_4726 
Symbol 
ID5198368 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp5195061 
End bp5196938 
Gene Length1878 bp 
Protein Length625 aa 
Translation table11 
GC content69% 
IMG OID640584281 
Productmulti-sensor hybrid histidine kinase 
Protein accessionYP_001265201 
Protein GI148557619 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.140851 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCGCAG GGCGCCGTCC TCCCTATCTG GCTCTGGCCG GACTGCTGGT CGCGATCCTC 
GCGGCGGTCG CCGCGCTGTT CCTGACGCGC GCGCAGAGCC GGGCCGGCGA CTGGGCCGAG
CATTCGCTGC GGGTACAGGT GATGCTGACC GGGCTCACCG ATCATGTCCG CGCGCTCGAA
TCCGATCATC GCGGCTATGT CCTATCGCGC AGCCGGGACA TCCGCGCCGA CTTCCGGAAA
CAGGTCGATG CGCTTCCGCC CGTGCTCGAC CGGCTGCAAT ATGAGGTGCG GGACAACCCC
GCCCAGTCGG CGCACATGGA GGAACTCCGC CGCGCCGTGC AGGCGAAGGT CGACTATGCG
CGCCAGGGCG TGTCGGCGGT CGACGCTGGC CGCCGCGACG AGGAGATCGC CCGGATGGGC
CTGGGCGAAG GCGCCCGCCG GATGGACGCC GCGCTCGCCG TCATCCACCG CATGGTCACC
GAGGAGGAAT GGCTGCTGGC GGACCGGCGC GCGACGACCG ACACGCTTGT CCTCGGCCTC
GGGCTGGTGC TGGTGGCGAC CCTGCTGCTC GTCCTGCTCA TCGCCGGCCT CGTCATCCGC
GACGCCAACC GGCGCGAGCG CGAGGTGATC GTCGCCCGCG ACGAGGCCGT CGCCGCCGAA
CAGGCGCTAC GCGAGGAGAT CGCCGCGCGC GCGCAGATGG AGGAGAAGAT CCTCCATCTC
CAGAAGATGG AATCGATCGG CCAGCTCACC GGCGGGATCG CCCATGATTT CAACAATATG
CTGGCAATCG TGATCGGCAG CCTCGACCTC GCCCGGCGGC GGCTGACCGG CGATCCGGAG
CGGCTGGCGC GCAACATCGA CAATGCCTTC GAAGGCGCCG AGCGCGCCGC CGCCCTCACC
TCCCGGCTGC TCGCCTTCTC GCGCCAGCAG CCGCTCGCCC CGATCACGCT CGACATCAAC
AAGCTCGTCT CGGGCATGTC GGAACTGCTG CAACGGACGC TGGGCGAGCC CTATCGGATC
GAGACGGTGC TGGCCGGCGG CCTGTGGCGC AGCTTCGCCG ATCCGGGCCA GCTCGAAAAC
GCGGTCGTCA ACCTGGCGGT CAACGCGCGC GACGCGATGC CGGGCGGCGG ACGGCTGACG
ATCGAGACGT CCAACGCCTA TCTCGACGAC GAATATGCCA AGACCCGGCC CGAGGTGACG
CCCGGCCAAT ATGTGATGAT CAGCATCACC GACACGGGCA GCGGCATGGC GCCCGAGGTG
CTCGCCAAGG CGTTCGACCC CTTCTTCACC ACCAAGCCGG TCGGCAAGGG CACCGGCCTG
GGGCTCAGCC AGATCTTCGG CTTCGTCAAG CAGACCGGCG GCCATGTCGC GATCTATTCG
GAGCTCGACC AGGGCACGAC GGTGAAGCTC TATCTGCCGC GCAGCTACGG CCTGGCGATC
GATCCCCGCA GCCGGCAGGC GATGGCCGAG ACCGAGGTGC CCCGTGCCCG GACCGGCGAG
ACGATCCTGG TCGTCGAGGA CGAGCAGCGC GTCCGCCACT TCTCGGTCGA TGCGCTGCGC
GACCTCGGCT ATGTCGTGAT TTCCGCCGCC AACGCGGCCG AGGCGCTCGA GGCGCTCACC
GCGCAGCCGA CGATCAGCAT GTTGTTCACC GACATCGTCA TGCCGGAGAT GAACGGCCGC
CAGCTCGCGG ACACGGCGCT CGAGCTGCGG CCCGGCCTGC CGATCCTGTT CACCACCGGC
TATACCCGCA ACGCCGTGAT CCACAACGGC ATGCTCGACG CGGGCGTCGC CTTCCTCGCC
AAGCCGTTCA GCCTGAGCCA GCTCGGCACC AAGGTGCGCG AGGTGCTCGA CGGCGGCGGC
GTCAACCGCC CGGCCTGA
 
Protein sequence
MLAGRRPPYL ALAGLLVAIL AAVAALFLTR AQSRAGDWAE HSLRVQVMLT GLTDHVRALE 
SDHRGYVLSR SRDIRADFRK QVDALPPVLD RLQYEVRDNP AQSAHMEELR RAVQAKVDYA
RQGVSAVDAG RRDEEIARMG LGEGARRMDA ALAVIHRMVT EEEWLLADRR ATTDTLVLGL
GLVLVATLLL VLLIAGLVIR DANRREREVI VARDEAVAAE QALREEIAAR AQMEEKILHL
QKMESIGQLT GGIAHDFNNM LAIVIGSLDL ARRRLTGDPE RLARNIDNAF EGAERAAALT
SRLLAFSRQQ PLAPITLDIN KLVSGMSELL QRTLGEPYRI ETVLAGGLWR SFADPGQLEN
AVVNLAVNAR DAMPGGGRLT IETSNAYLDD EYAKTRPEVT PGQYVMISIT DTGSGMAPEV
LAKAFDPFFT TKPVGKGTGL GLSQIFGFVK QTGGHVAIYS ELDQGTTVKL YLPRSYGLAI
DPRSRQAMAE TEVPRARTGE TILVVEDEQR VRHFSVDALR DLGYVVISAA NAAEALEALT
AQPTISMLFT DIVMPEMNGR QLADTALELR PGLPILFTTG YTRNAVIHNG MLDAGVAFLA
KPFSLSQLGT KVREVLDGGG VNRPA