| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4247 |
|---|
| Symbol | |
|---|
| ID | 5197202 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 4680421 |
|---|
| End bp | 4681284 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640583801 |
|---|
| Product | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase |
|---|
| Protein accession | YP_001264725 |
|---|
| Protein GI | 148557143 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.119814 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCTCG TCACATTCCA CCATCAGGGC CGGACCGGCT TCGGCTGCGT CGAAGGCGAT
CGGGTGCTCG ACTTCGCCCC GCACGGCGAG GCGCGGAGCC TGCGCGACTG TCTGCCGCTG
GGACTCGAGG AATGGCGGCG GCTCGCCGAT GCGGCGCGCC GCTCGGGCGG CCTCGCGCTC
GCCGACGTCC GGCTGATGGC GCCGATTCCG GATGCGCGGA AATTCCTGGC GCTCGGCGGC
AATTACGCCT CGCACGCCGC CGAGGCGGAG AAGGCCGGAT TCCGCCGCGG CACGGCGCAG
ATCTGGTTCA ACAAGCAGGT GTCGTGCATC AACGGCCCCT ATGATCCGGT GGTGCGGCCG
AAGGTGTCGC ACCAGCTCGA TTATGAAGGC GAGCTGGGCG TCATCATCGG CAAGGATTGC
CGGTACAAGG CTGGCGACGC GGTGTGGGAG CATCTCGCCG GCTATGTCGT CTGCTGCGAC
TATTCGGTGC GCGACTGGCA GCTGCGCGCG CCGACGCACA CGCTGGGCAA GTCGTTCGAC
ACCCATGGCC CGCTGGGTCC CTGGATCGTC ACCCGCGACG AGATAGCCGA CGTCCACGCG
CTCGACCTCA GGCTGACCGT CAACGGCGAG CTGCGGCAGA GCGCCAGCAC CGCCGACATG
ATCCACAAGA TTCCGGCGCT GATCGAGGAG CTGTCGACCG CCTTCACCCT GCAAGCCGGC
GACATCCTGT CGACCGGCAC GCCGGCCGGG GTCGGCGGGC TGTTCGATCC GCCCCGCTAC
CTGGTGCCCG GCGACGTGGT GCGCGTCGAG ATCGGCTCGA TCGGGCATAT CGAGAATATC
ATCGTCGACG AGCCGGGCGC CTGA
|
|---|
| Protein sequence | MRLVTFHHQG RTGFGCVEGD RVLDFAPHGE ARSLRDCLPL GLEEWRRLAD AARRSGGLAL
ADVRLMAPIP DARKFLALGG NYASHAAEAE KAGFRRGTAQ IWFNKQVSCI NGPYDPVVRP
KVSHQLDYEG ELGVIIGKDC RYKAGDAVWE HLAGYVVCCD YSVRDWQLRA PTHTLGKSFD
THGPLGPWIV TRDEIADVHA LDLRLTVNGE LRQSASTADM IHKIPALIEE LSTAFTLQAG
DILSTGTPAG VGGLFDPPRY LVPGDVVRVE IGSIGHIENI IVDEPGA
|
|---|
| |