| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4006 |
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| Symbol | |
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| ID | 5199712 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 4399663 |
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| End bp | 4401078 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640583564 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001264489 |
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| Protein GI | 148556907 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGCTCC TTCCCGATCT TCGTCGCATG CTGACCCGCA CGGAACCCGC CCCGGACGAG
GAAACCGACG ACGTCTCGCC CGCCCCCGTC GCGTTCAGCC TTGCCCCCGC CCAGAGCGAT
CCGGAACTGG AACGCGACCT GCGCCGGCCG ATGCGGACCG GCGGGATCGT CGTCCTCGCC
CTGGTCTTCG CCCTGCTGGT CTGGGCCGCG GTCTTCAAGA TCTCCGGCGC GGCGATGGCC
ACCGGCGTGG TTAAGGTCGA GAACAACAGC AAGAATCTCA GCCGTCTCGA AAGCGGCGTG
GTCCGTCAGA TCTTCGTCCG GGAGGGACAG AAGGTCGCCA AGGGGCAGTT GCTGATCCGC
TTCGACGACA GCCAGGCCGG CGCCTCGGTC GACATCTACC AGAGCGTCGT CGACAGCTCG
AACGCGCAGA TCGCGCGCTT CCAGGCGGAG GCCGCCGATG CCGCCGCCGT CGCCTATCCG
TCCGAGCTGC GCAGCCGGAT GAACGACCCG CGCGTCGCCG CACTGATCCA GGGCCAGGAT
GCCCTGTTCC AGACCCGGAC GACGCTCTAC CGCAGCCAGG CGCTGGTGCT CGGCTCGCAG
GCCCAGCAGC TCGAGACGCA GATCAACGGC CTGAACATCC AGGCTCAGGC GATCGAGGAC
CAGAGCAAGC TGATCCGCGA GGAGCTGGAT GGCGTCCGCG AACTGGCGCG GCAGGGCTAT
GCCCCGAACA GCCGGCTGCT GGCGCTCGAG CGGAATGCGG TTCAGGTCCG CGGCCAGAAG
GGCTCGGTGA TGTCCGACGT CGCCCGGGTC CGGCAGTCGA TCGGCCAGAT CCGCCTGCAG
ATCGCCCAGC TCGAGGACCG TCACCAGACC GAGGTCGCCG ACGGCATCCG CGCCGCACAG
GAAAAGCTCG CCGACGCGGT GCCGAAGCTG CGCGCCTCGC AGGTGCTGCG CGACCAGTCC
GAGGTCCGCG CGCCGGTCGC CGGCTATGTG TTCAACCTGA CCCAGTTCAC CGAGGGCGGT
GTCGCCGGGG CCGGGCAGAC GCTGATGCAG ATCGTCCCGA CCAACACCGA GCTGATCATC
GCGGCCGAGG TTTCCCCGCG CGACATCTCC GATGTCCGCA AGGGCATGCC GGCGCGGGTG
ACGCTGCTGG GCTTCAACCC CCGGCTGGTC TCGCCGGTCG ACGGCACCGT CTCACTGGTG
TCGGCCGACG CGCGGGTCAA CGAAAAGAGC GGCACGAGCT ATTTCCTCGT CGAGATCACG
GTGCCGGCGG CGAATCTCGC CAAGGCGGGA CCCAATGTCC ACCTGACTCC CGGCATGCCG
GCCAGCGTGG CGATCGTCAC CGGCGAGCGC TCGATCCTCG ACTATCTGCT CGAACCGTTC
ACCGACTCCA TGCGGACGGC AATGAGAGAA AGATGA
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| Protein sequence | MKLLPDLRRM LTRTEPAPDE ETDDVSPAPV AFSLAPAQSD PELERDLRRP MRTGGIVVLA
LVFALLVWAA VFKISGAAMA TGVVKVENNS KNLSRLESGV VRQIFVREGQ KVAKGQLLIR
FDDSQAGASV DIYQSVVDSS NAQIARFQAE AADAAAVAYP SELRSRMNDP RVAALIQGQD
ALFQTRTTLY RSQALVLGSQ AQQLETQING LNIQAQAIED QSKLIREELD GVRELARQGY
APNSRLLALE RNAVQVRGQK GSVMSDVARV RQSIGQIRLQ IAQLEDRHQT EVADGIRAAQ
EKLADAVPKL RASQVLRDQS EVRAPVAGYV FNLTQFTEGG VAGAGQTLMQ IVPTNTELII
AAEVSPRDIS DVRKGMPARV TLLGFNPRLV SPVDGTVSLV SADARVNEKS GTSYFLVEIT
VPAANLAKAG PNVHLTPGMP ASVAIVTGER SILDYLLEPF TDSMRTAMRE R
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