| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4001 |
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| Symbol | |
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| ID | 5198571 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 4390740 |
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| End bp | 4394645 |
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| Gene Length | 3906 bp |
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| Protein Length | 1301 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640583559 |
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| Product | glycosyl transferase family protein |
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| Protein accession | YP_001264484 |
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| Protein GI | 148556902 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3754] Lipopolysaccharide biosynthesis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.248579 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGGCGG CGCTGGTCCT CCACCTCTTC TACCCCGAGG TCGCGGTAGA GCTCATCGAC
CGAGTGGCGG CGATCGGCGC GTCGGTCGAT ATCTTCGTCA CGCACAGCGT CGCGCTCGAC
GAGACCGTCC TCGCCGCGCT CGATCGCCTG CCGCGCAAGG CGGAGGTGGT GACCGTCGCC
AATCGCGGCT GGGACATCGG CCCGCTGTTC GAACTGCTGC CGCTGCTCGC CGAGCGCGGC
TACGACCTGA TCGGCAAGCT CCACAGCAAG AAGGGTGGAT CGGGCTATGC GCCCGAATGG
CGCCGGCTCG CCTATGACGG GATGATCGGA TCGCCCGCGC TGGTCGCCGA CATCGTCGCG
GCGTTCGACG CGCACCCCGA TCTGTCGCTG CTGGGGGCGA AGCCGCTCTA CAAGTCGGTC
GCCAGCCATC TGTTCCGCAA TGCCGAGCTG CTCTCCGACC TCGCCCCGCG CCTGACCGCG
CCCGCCTATC CTCCGGCCGA CTGGGGTTTC TTCGCCGGCA CCTTCTTCTG GGCGCGGCGG
ACGCTGCTGG AGAAGGTCGC GGCGCTTGCC GACTTCCGCG ACGCGGCCCC CAACCAGGAT
CGCGACGGTG CGCTCGGCCA TGCGGTCGAG CGGCTGTTCG GCCTCGCCCC GATCGGGCTG
GGCGGCAAGA TCGGACTGGT CGAGGACGGC CGGATCGAGC TGATCCGGGC GCCGGGCGCG
CCGTCGCACG AGCCGGTGAT CCAGACGCTG GTCGACGCGG CGGGGCTCGG CGTCGGGCCG
GTCGACGAGC AGCTGGCGGC GCTGATCGCG ACGCACAACC CGCTGATCGA CTATATCCGC
CATGGCCGCG AGGCCGATGC GCTCGATCCC AATCTCTATT TCTCGTCCGC CTGGTATAAT
TCGATCCACG CCGACGTGCA TGCGGCGGGG ATGCTGCCGC TTCACCATTA TATCCACCAT
GGCGCGGCCG AGGGACGGTC GACCGGGCCG CTGTTCGACG GCCTCTTCTA CCGCAAGAGC
CATGACGACG TGACCGGCGA TCCGCTGCGC CACTTCCTCG AGGTCGGGGC CGCCGAGGGG
CGGGTGGCGA TCCCGGTCAG CCGGCCGCGC TACGAGACCG GCGACGAACG GCCGCGCCGC
TTCTACCGCC ATTTCGACAT CGCCCGCGAG GAGGCCTTCC TGCGCGCGAT GGCGGAGCTG
CCCGACGATG TCCGCCAGAG GGCCGACGAG ACGCTGGTCA GCGTTGTCAT GCCCGCCTGG
AACCGGGCGG ACCGGATCGC GGCGGCGATC CGGTCGGTGC TGGCGCAGAG CCACCGCCGG
TTCGAGCTGC TGGTCGTCGA CGACGGATCG ACCGACGGCA CCGCCGAGAT CGCCGCCGCC
TTCGCCAGCG ACCCGCGCGT CCGCCTGATC CGCGGCGGGC ATGGCGGGGT CAGCGCCGCG
CGCAACCTGG GGCTGGAGGC GGCGACCGGC GAGATCGTCG CCTATCTCGA CAGCGACAAT
GTCTGGAAGA GCTGGTTCCT CGACGTGATG GCGCTGTTCA TGACCGCCGA GGGGCTCGAC
GCCGCCTATT CGGGGATCGC GCTGCGCGAC GAGCTCAACC AGCTCACCGG CTATCGCGGC
GACGATTTCG ACTGGGACGC CTGCCTCGCC GAGAATTATG TCGACCTCAA CGCCTTCTGC
CACCGCCGCG CGCTGGTCGC CGGGCTTGGC GGGTTCGACA CCAACCTCCG CCGGATGGTC
GATTGGGACC TGATCCTGCG CTACGCCAAG GGGCGCCCGG TCGGCTATGC GCCCTTCGTC
GGCGGCGAAT ATCATGACGC GAAGGGCGAC CAGGGGCGGA TCACGGTCAC CCAGCCGGCC
GCCTTCCAGG CGCTGGTGCG GACCAAGAAC CGGCTCGGCC TGCCCACCGG CGCCGGCGCG
CATGAACTGG CGGCGGCGCT GAAGCTCACC ATCGCGATCA AGATCGCCGC GCCCGAGGAG
GAGAAGGCCG CCTGGGGCGA CTATCACTTC GCCGAGAGCC TCGCCGCCGC GATCGGCCGG
CTGGGCCATG CCGTCCGGAT CGACTTTCGT GGCCAGTGGC ACGGCCATGC GATCGCCAGC
GAGGATCTGG TGATCGTGCT GCGCGGCCTG ATCCCCTATG AGCCGCGTCC CGGCCAGATG
GCCTTCCTCT GGAACATCAG CCATCCCGAC CAGGTCGGCT TCGACGAATA TGACCGCTAT
ACGCGCGTCT ATGCCGCCTC GGGATCGCAT GCCGCGCTGC TCGGGCATAT CGTCCGCCCG
CCGGTCGCTC CGATGCTGCA GGCGACCGAT CCCGGGCGCT TCCACCCGAT CGATCCGCCG
CCGTCTGCGC CTGACATCGT TTTCGTCGGC AATTCGCGCG GTGTCGACCG GGAGATCGTC
TCCTGGGCGA TCGAGGCCGG GCATCCGCCC GCCATCTACG GCGACGGCTG GGACGGTCGC
GTGCCGGCCG ATCTGGTCAG GGCCCGCAAC GTCGACAACC GCGCGGTCGG CGCGCTCTAT
GCCGGCGCGG GCGTGGTGCT CAACGATCAC TGGCCGTCGA TGCGCGCCTT CGGCCTGCTG
TCGAACCGGC TGTTCGACAT CGTCGGCAGC GGGGGGAGGG CGCTGTCCGA TCCGGTGCCG
TCGATGGCGT CGGTGTTCGG CAATGCGGTG GCGCAGGTCT CGGGCCCGGC CGAGCTGAAG
GCGGCGGCGG ACGAGCTGCT CGCCCGGCCG CGCAACGATC CGGCGGCGCG GCTGGCCGCC
GACTATGTCC ATGCCGAGCA CAGCTTCGAC GCGCGGGCGC GGACCTTCAT CGCCGACGCC
TTCGCGGTGC TGGGCCTGCC GTCGCCGGTT CCGGCCAATG CCCCCGATTT CGACGATCGG
CTCGCCGTCC ACGTCATCGC CAGGCACAGC GCGATCGGCC CGCAGAGCTC GGCCTATATC
CGGCTGGTCG CGCCGCTGAC CGACGAGAGC GTCGCGGGGC GGCTGCGGCT GACGCTCGGC
GCGCCCGACG ATGCCGTGCC CGACTGCGAC GTCTGCATCG TCCAGCGCAC CGCGCTGCCG
ACCGTCGAGG CGGTCGACGC GTTGGTCCGG CGGCTGGGGG AGATGGGCGC GGCGCTGGTC
GTCGATGTCG ACGATGCCTT CACCCTGATC GGGTCGGATC ATCCCGAGCA TGATCTCTAT
CGCCCGCTCA ACGCCGCGCT CGACCGGGCG GTGGCGGCCG CGGCCGAGAC CTGGTTCTCG
ACCGCCGAGC TGGCTGACGC CTATGCGCCG CTCGGCGCGC GTGGAATCGT CGCGCCCAAC
GCGATCGACC CCCGGCTGTG GCGCGACTGG CGCACGGCGC GGCCTACGCC CTTCGCCGGG
GACAAGGTGC GGATGCTCTA CATGGGCACC CATACCCATG GGCCCGATCT CGCCCTGATC
CGGCCGGCGC TCGACCGGCT CCATGCCGAG CGTGGCGACG CCTTCGACCT GACCGTGATC
GGGGTCGATC CCGATCTCGC GCCCGCGCCC TGGCTGCGCC GGCTGGCGCC GCCGGCCGAG
GCGGTCAGCT ATCCGCGCTT CGTCCGCTGG CTGCGCGGGC AGGGGCCGTT CGACCTCGGC
CTGGCTCCGC TCGCCGATAA TCCGTTCAAC CGCTGCAAGT CGGACATTAA GGCTCTCGAC
TATGCGGCGC TCGGCATCCT CCCGCTGGTC AGCGACGGAC CCGCCTATCG GGCCGACCGG
CTGCTCGGGC GCCACATGCC GTTCGCGGAG GCGGATGGCT GGCTCGACGC GCTGCGGGCG
GTGCTCGACG ATCGCGGCGA TGCGGCGCGG CGGGCGGCGG CGGTCGAGGC GCATGTCTGG
GATCGCCGCG TGGTGGCGCG GAGCGGCCCG ATGCTCGTCG ACCGGCTCGA GGCATATCGA
CGGTAG
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| Protein sequence | MKAALVLHLF YPEVAVELID RVAAIGASVD IFVTHSVALD ETVLAALDRL PRKAEVVTVA
NRGWDIGPLF ELLPLLAERG YDLIGKLHSK KGGSGYAPEW RRLAYDGMIG SPALVADIVA
AFDAHPDLSL LGAKPLYKSV ASHLFRNAEL LSDLAPRLTA PAYPPADWGF FAGTFFWARR
TLLEKVAALA DFRDAAPNQD RDGALGHAVE RLFGLAPIGL GGKIGLVEDG RIELIRAPGA
PSHEPVIQTL VDAAGLGVGP VDEQLAALIA THNPLIDYIR HGREADALDP NLYFSSAWYN
SIHADVHAAG MLPLHHYIHH GAAEGRSTGP LFDGLFYRKS HDDVTGDPLR HFLEVGAAEG
RVAIPVSRPR YETGDERPRR FYRHFDIARE EAFLRAMAEL PDDVRQRADE TLVSVVMPAW
NRADRIAAAI RSVLAQSHRR FELLVVDDGS TDGTAEIAAA FASDPRVRLI RGGHGGVSAA
RNLGLEAATG EIVAYLDSDN VWKSWFLDVM ALFMTAEGLD AAYSGIALRD ELNQLTGYRG
DDFDWDACLA ENYVDLNAFC HRRALVAGLG GFDTNLRRMV DWDLILRYAK GRPVGYAPFV
GGEYHDAKGD QGRITVTQPA AFQALVRTKN RLGLPTGAGA HELAAALKLT IAIKIAAPEE
EKAAWGDYHF AESLAAAIGR LGHAVRIDFR GQWHGHAIAS EDLVIVLRGL IPYEPRPGQM
AFLWNISHPD QVGFDEYDRY TRVYAASGSH AALLGHIVRP PVAPMLQATD PGRFHPIDPP
PSAPDIVFVG NSRGVDREIV SWAIEAGHPP AIYGDGWDGR VPADLVRARN VDNRAVGALY
AGAGVVLNDH WPSMRAFGLL SNRLFDIVGS GGRALSDPVP SMASVFGNAV AQVSGPAELK
AAADELLARP RNDPAARLAA DYVHAEHSFD ARARTFIADA FAVLGLPSPV PANAPDFDDR
LAVHVIARHS AIGPQSSAYI RLVAPLTDES VAGRLRLTLG APDDAVPDCD VCIVQRTALP
TVEAVDALVR RLGEMGAALV VDVDDAFTLI GSDHPEHDLY RPLNAALDRA VAAAAETWFS
TAELADAYAP LGARGIVAPN AIDPRLWRDW RTARPTPFAG DKVRMLYMGT HTHGPDLALI
RPALDRLHAE RGDAFDLTVI GVDPDLAPAP WLRRLAPPAE AVSYPRFVRW LRGQGPFDLG
LAPLADNPFN RCKSDIKALD YAALGILPLV SDGPAYRADR LLGRHMPFAE ADGWLDALRA
VLDDRGDAAR RAAAVEAHVW DRRVVARSGP MLVDRLEAYR R
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