| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3959 |
|---|
| Symbol | |
|---|
| ID | 5199977 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 4346422 |
|---|
| End bp | 4346994 |
|---|
| Gene Length | 573 bp |
|---|
| Protein Length | 190 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640583515 |
|---|
| Product | uracil-DNA glycosylase superfamily protein |
|---|
| Protein accession | YP_001264442 |
|---|
| Protein GI | 148556860 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3663] G:T/U mismatch-specific DNA glycosylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.306587 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCTGCTTG GCAGCGTCGG CAAATCCCAC CATCTCCGGG CCATGACCGA TCTTCCCCCG
CGCAAGGCCA GCTTCCCCCC GGTGGTCTCC GCCGACACCC GCCTGCTGCT GCTCGGCAGC
CTGCCGGGCG AGGCGTCGCT GCGCGCCGCG CGCTATTATG CCCATCCGCA GAACCAGTTC
TGGCGACTGA CCGGCGCGGT GATCGGCGAC GAGGGGCTGG CGCTGCTCGA CTATCCGGCG
CGGCTCGACC GGCTGCGCGC GGCCGGGGTC GGCCTGTGGG ACGTCGTCGC CGACGCGCTG
CGCGACGGCA GCCTCGACGG GGCGATCCGC GATCATCGGC CGAACGATCT TGCGGCGCTC
GTCGCGACGC TGCCGGCGCT CCGCGCGATC GGCTTCAACG GCGGCACGGC GGCGCGACTC
GGGCGGCGGA TGATCGGGGC GCCGGCGGGA CTCGCGCTGG TCGACCTGCC GTCGAGCAGC
CCCGCCTTCA CCCGGCCGAT CGCCGAGAAG CGGGAAAAAT GGCTCCATTT GCGCGAATTC
CTCGATCCGA TAGCCGGATT CCGCCGCGAT TGA
|
|---|
| Protein sequence | MLLGSVGKSH HLRAMTDLPP RKASFPPVVS ADTRLLLLGS LPGEASLRAA RYYAHPQNQF
WRLTGAVIGD EGLALLDYPA RLDRLRAAGV GLWDVVADAL RDGSLDGAIR DHRPNDLAAL
VATLPALRAI GFNGGTAARL GRRMIGAPAG LALVDLPSSS PAFTRPIAEK REKWLHLREF
LDPIAGFRRD
|
|---|
| |