Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3698 |
Symbol | |
ID | 5197361 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 4061447 |
End bp | 4062130 |
Gene Length | 684 bp |
Protein Length | 227 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640583254 |
Product | conjugal transfer protein TrbF |
Protein accession | YP_001264182 |
Protein GI | 148556600 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3701] Type IV secretory pathway, TrbF components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCCGAC GCCCCACCAT CCGCTATGGC CAGACCCCCG AACCCACGAC ACCCTATCAG CGCGCAGCCC AGCAATGGGA CGATCGCATC GGCTCCGCGC GCGTGCAGGC GAAGAACTGG CGCCTCGCCT TCTTCGGCGC ACTGGCGCTC TCGGGCGGCC TTTCCGCCGG TCTCGTCTGG CAATCGGCGC GTGGGCATAT CGTGCCCTGG GTGGTGCAGG TCGATCGGCT CGGCGAGGCG CAGGCGGTCG CGCCCGCCGA GGCCGGCTAT CGCCCCACCG ATCCGCAGAT CGCGTTCCAC CTCGCCCGCT TCATCGAGCA GGTCAGGGCG ATCCCGGCCG ATCCGGTGAT CGTCCGCCAG AACTGGCTGC GCGCCTACGA CTTCACGACC GATCGGGGCG CGGTGGCGCT CAACGACTAC GCCCGCGCCA ACGACCCCTT CGCCAATGTC GGCCGGGTGC AGGTCGCGGT GGACGTGTCG AGCGTGATCC GGGCCTCGCC CGACAGCTTC CGCGTCGCCT GGACCGAGCG CCGCTATCAG GACGGGAGCC TCGCCGCGAC CGAACGCTGG TCGGCCATCC TCACCATCGT CGTGCAGCCG CCGCGCACGC CCGACGCCCT GCGCAAGAAC CCGCTCGGCG TCTTCGTCAA CGCTTTGAAT TGGTCAAGGG AGCTGTCGCA ATGA
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Protein sequence | MFRRPTIRYG QTPEPTTPYQ RAAQQWDDRI GSARVQAKNW RLAFFGALAL SGGLSAGLVW QSARGHIVPW VVQVDRLGEA QAVAPAEAGY RPTDPQIAFH LARFIEQVRA IPADPVIVRQ NWLRAYDFTT DRGAVALNDY ARANDPFANV GRVQVAVDVS SVIRASPDSF RVAWTERRYQ DGSLAATERW SAILTIVVQP PRTPDALRKN PLGVFVNALN WSRELSQ
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