Gene Swit_3535 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_3535 
Symbol 
ID5197861 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp3891896 
End bp3894700 
Gene Length2805 bp 
Protein Length934 aa 
Translation table11 
GC content74% 
IMG OID640583090 
Producttetratricopeptide TPR_4 
Protein accessionYP_001264019 
Protein GI148556437 
COG category[S] Function unknown 
COG ID[COG4995] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.155601 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTCATGC GAGCGATGAT TCTGGCGACG GCGCTATCGA TGGCGCCGGC CGCCCAAGGG 
ATGGCGGCAA CGCAGGATCC GATCGCGGTC GCCCGGTCGA TCGACATCGA GGCCGACCCC
GCCGGCGCGG TAGCGGCCTG GCAGGCGGCC CTGCCCGCCG CCCGCGCGCG CTTCCGCGCG
ACGCCGGCGG AGCTGGGCCA GGTGCTGGTG CGCTACGGCT CGGCGCTGAT CGGCGTCGGC
CGCGACAAGG AAGCGCTGCC CCTGCTCGAG GAAGCCGCCC CGTTGCTGGC CGTGCTGCCG
CCGGACGATC CGGCGCGGCT CACCGGTGCG ATAGCGCTGG CGCTGGGCCG CGCGTCCGCC
GGCCGGACCG CCGAGGCCGT CGCCATGCTG GAGGAGGTGG CGGCGATCCA GCGCGCCGCT
GCGCCGGGCG GCAGCACCGC GCTGGCCGAG ACATTGTTCA ACATCGGATC GGTCGAACAG
CAGGCGGGGC ATCTCTCCAC CGCCGCCGAA CGGGTGGAGG AAGCCCTGGC GCTGCACCGC
CGCCTGTCGC CGCCGGATGC CGAGGTCACG GTCGGCACGG CCACCAGCCT GAGCTCGATC
TACACCCAGG CGGGCCTGCT GGCGAAGGCG GAGGATGTCG CGCGCGATGC GCTGGCGATG
GCCGCGCGCG GCCTGCCGCA GGATCATCCG CTGACGATGA TCACCCTGTC CAACTATGCC
GCCGTGCTCG ACACCCAGGG ACGCTGGCGC GAATCCGAGC CGCTCTATCG GCGGCTGCTT
CCGCTGCGCA TCGCCAAGCT CGGCAAGGAG GCGATCAGCA CCGCCATCAC CGAATCGAAT
TTCGGCCGGG CGCTGCGCCT GTCCGCGCGC CCGGAGGAAG CCCTGCCCCT GCTCGAGGAA
TCGGTGCGCG TCGCCGAACG CAAGCTGGGC GCCAGCGATC CCCGGCTCAA TCAGTTCCGC
GAGAATCTCG CCGACGATTA TCGCGACCTC GGCCGCCTGG CCGACGCGGT CGCCCTGCGC
CGCCAGGCGA TCGCGGCGTT CAGGGTCGAC TTCCCCCGGC ATTTCCGGCT CGCTTCGCTA
CAGGAGGGGC TGTCGGGCGA CCTCGCCGCG CTGGGCGACA TGGCGGCCGC GCGGGCCGAG
ATCGAACAGG CGCAGGCGAT CCGCCACGCC ACGCTGGCCC CCGATCATCC CGCGCTGCTG
GGCGGCGAGA TCGCGGCGGG CCATCTTCTG GCGCGCGCGG GCGACGGGAC GGCCGGCCTC
GCCCGCGCGC TGCCGGCCTA TCGCCGGCTC GCCGCGATCG CCAACGCCAA CCAGACCGAG
ATCAGCCGCG ACCTGGTCTT CCGCGGCGCC TTCGAGACGA TGGCCCGGCT CGCCTGGCTG
ACGCAGGACC AGCCGCTGGC GCTCGACGTC GCCCAGCGGC TGGTGATCGG CGACAGCGGC
CGCGCTATCA CCGCGGCGCT CGCCCGCGGA CGGAGCGAGC AGGCCCAGCG CGTCCGCGCC
CGCCAGGACG CCACGGCCCG CCGCGCGGCG CTCAGCCGCG TCGCCCTCGA ACGCTATGGC
CGCGATTCCG CCGGCTACGA AGCCGCGCTG GCCGAAATCG CGAAGATCGA TGCCGCAATG
ACCGGCCAGA CCGAAGCGAC GCGGGACATG ATCGTCGATA TGGACGGCCT GCGCGGCACG
CTCGATCGCG GACAGGCCCA GCTCTATTTC GTGCAGCTCG ACGATCGGCT GTTGTCGCTC
GCCGTCGACC GCGACCATGT CGCCTTCGGG GACAGCGCGA TCGGCGACCG CGCGCTTCAC
GGCCTCGTCG CCGGCCTGCG CGGTTCGATC GATACCGGCC AGCAAGCCCG CGGCGCGATC
GCCGACGGCG GTGAGGCCCC AACCTATGAC GGCGATGCCG CCGCCCGGCT GTACGACCTG
CTGCTCCACG GAGCGCCCCG GCGGATCGCC GAACACAACC CACGCTGGCG CATCGCGACG
AGCGGGTCGC TGCTGGCGGT GCCCTTCGCC GCGCTGGTCA CCCAGCGACC GGCGGCCGGA
CGCGCGCCGC GCTGGGTGAT CGACGATCAT GCGATCCTCC TCGCCGCCGG CGGCTCCTCG
CCCGACGGCG CGTCGCCGGG ATCGGGACGG TTCGTCGGCA TCGGCGCGCC GCTGCTGAAG
GGGAGCGCCA CGGGCGGCGC ACGCACCTAT CGCGATGCCG GGGGCGTGGT GCGGGACATC
GCCGCCCTCG CCCCGCTTCC CGGCGCGGCG CATGAGCTGG CGGCGATGCG CGCGAAGATC
GGCGGCCCGG ACAGCGTGGT CCTGCTCGGC GCCGACGCGA CCGAAGCGGC GGTGCGCGGC
ACCCGCCTGA CCGATGTCAG GGTTCTCACC TTCGCGACAC ACGGCCTGGT CGCGGGCGAC
GTCACCGGCC TGCTCGAACC CGCGCTGGTG CTGACCCCGG CGGCGCAGGG CGACGCCGAC
GACGACGGCC TCCTCACCGC CTCGGAGATC GCGCAGCTCA CCACCGACGC CGCGCTGGTG
GTGCTGTCCG CCTGCGACAC GGCGGCCGGC GATTCCCGGG ATGCGCCGGC GCTGTCCGGG
CTGGCGCGCG CCTTCTTCTA CGCGGGCGCC CGGTCGCTGC TCGTCAGCCA CTGGCCCGTG
CGGGACGACA TCGCCGCCCG CATCACCGTC GCGGTGGCGC GCGACGGACG GGCCGCGCCG
GAAGAAAGGC TGCGCCGCGC GATACTGGAT ATCCGCCGTG ATCGTCGCAT GGCGGGCGCG
GATCGGCCCG AGACCTGGGC GCCGTTCACC CTGGTCAGCC GGTAG
 
Protein sequence
MVMRAMILAT ALSMAPAAQG MAATQDPIAV ARSIDIEADP AGAVAAWQAA LPAARARFRA 
TPAELGQVLV RYGSALIGVG RDKEALPLLE EAAPLLAVLP PDDPARLTGA IALALGRASA
GRTAEAVAML EEVAAIQRAA APGGSTALAE TLFNIGSVEQ QAGHLSTAAE RVEEALALHR
RLSPPDAEVT VGTATSLSSI YTQAGLLAKA EDVARDALAM AARGLPQDHP LTMITLSNYA
AVLDTQGRWR ESEPLYRRLL PLRIAKLGKE AISTAITESN FGRALRLSAR PEEALPLLEE
SVRVAERKLG ASDPRLNQFR ENLADDYRDL GRLADAVALR RQAIAAFRVD FPRHFRLASL
QEGLSGDLAA LGDMAAARAE IEQAQAIRHA TLAPDHPALL GGEIAAGHLL ARAGDGTAGL
ARALPAYRRL AAIANANQTE ISRDLVFRGA FETMARLAWL TQDQPLALDV AQRLVIGDSG
RAITAALARG RSEQAQRVRA RQDATARRAA LSRVALERYG RDSAGYEAAL AEIAKIDAAM
TGQTEATRDM IVDMDGLRGT LDRGQAQLYF VQLDDRLLSL AVDRDHVAFG DSAIGDRALH
GLVAGLRGSI DTGQQARGAI ADGGEAPTYD GDAAARLYDL LLHGAPRRIA EHNPRWRIAT
SGSLLAVPFA ALVTQRPAAG RAPRWVIDDH AILLAAGGSS PDGASPGSGR FVGIGAPLLK
GSATGGARTY RDAGGVVRDI AALAPLPGAA HELAAMRAKI GGPDSVVLLG ADATEAAVRG
TRLTDVRVLT FATHGLVAGD VTGLLEPALV LTPAAQGDAD DDGLLTASEI AQLTTDAALV
VLSACDTAAG DSRDAPALSG LARAFFYAGA RSLLVSHWPV RDDIAARITV AVARDGRAAP
EERLRRAILD IRRDRRMAGA DRPETWAPFT LVSR