| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3512 |
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| Symbol | |
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| ID | 5196251 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 3867528 |
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| End bp | 3868877 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640583067 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001263996 |
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| Protein GI | 148556414 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.657436 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0925086 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCTGC TGCTCGACGA TTTCGCGCAA CCCGCCCGCG CGGTCGCGCC GGAACCGGGC
GGAGCGGTCG TCGCCTCGCC GGTCAGCCAG CGGATGAGCG ACGCCTATCA GCTCGCCAAG
GCGCAGACCT ACGCCCAGGT GATCGAGCAG CTCGAAGCGC GCGGCAACGC GGCCGACGGT
CCGGCCAGCC GCCCGCTGCG CGAGGAGATC GAGATCGCGA TCACCAGCCG CAGCCGGCGT
GGCCAGCTCG CGCTCAACAG CGCCGAAAGG CTGCTGCTGA TCGAGGACAT CGAGGACGAG
GTGAGCGGCT TCGGCCCGCT CGCCCCGCTG CTGCGCGACC CGACCGTCGA CGACATCATC
GTCAACGGGC CGCACCGCGT CTATGTCGAG CGGACCGGCA AGCTGACCCG CGTCGAGACG
CGCTTCCAGG ACGATGTCCA CCTGATGAAC ATCATCCACC GGATCGTCGG CCAGATCGGC
CGGCGGGTCG ACGAGGCGAA CCCCTATGTC GACGCCCGGC TGTCCGACGG CTCGCGCGTC
AACATCGTCA TCCCGCCGGT CGCGATCGAC GGACCGATGG TGTCGATCCG CAAGTTCCGG
ATGCAGACGA TGTCGATCGC CGACTTCGTC GAGCGCCAGT CGATGAGCGC CGACATGGCC
GATTTCCTGG CCGCCGCCGT GCGCGGCCGG CTCAACGTCC TGGTCTGCGG CGGCACCGGC
GCGGGCAAGA CCACGTTGCT CAACATGCTG TCGAGCTTCA TCGACGAGAG CCAGCGGCTG
ATCACCATCG AGGACGCCGC CGAGCTGCAA TTGCGGCAGA GCCACGTCGT CCGGCTCGAG
ACCCGGCCCG GCAATGTCGA GGGCAGCCGC GAGGTCGGTT CGCGCGAGCT GCTGCGCAAC
GCGCTGCGGA TGCGGCCCGA CCGGATCATC CTGGGCGAGG TGCGCGGCGT CGAGGCGGTC
GAGATGCTCC AGGCGATGAG CACCGGCCAT GACGGGTCGA TGGCGACGAT CCACGGCAAT
TCGCCGCGCG ACGCCTTCTC CCGGCTGGAG ATGCTGCTCG GCTTCGCCGG GCTGCAGAAC
GACATCCGCG CCACCCGCCG CTTCATCGCC AGCAGCGTCC ACCTGCTCGT CCATGTCCAG
CGGCTGACCA ACGGCAGCCG CCGGATCATG TCGGTGACCG AGGTGACCGG CATCGAGGGC
GAGGCCTATT CGCTCAACGA ACTGTTCTCG TTCGAGGAGC AGCCGCCCAT GTCCGGGCTC
GGCGAGTTCC GCACCTCCTC CTACCGTCCG CATTTCGCTG ACCGCATCGG CAATTATCGC
GACGAGCGGA AGGACCAGCG GCTGTGGTGA
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| Protein sequence | MSLLLDDFAQ PARAVAPEPG GAVVASPVSQ RMSDAYQLAK AQTYAQVIEQ LEARGNAADG
PASRPLREEI EIAITSRSRR GQLALNSAER LLLIEDIEDE VSGFGPLAPL LRDPTVDDII
VNGPHRVYVE RTGKLTRVET RFQDDVHLMN IIHRIVGQIG RRVDEANPYV DARLSDGSRV
NIVIPPVAID GPMVSIRKFR MQTMSIADFV ERQSMSADMA DFLAAAVRGR LNVLVCGGTG
AGKTTLLNML SSFIDESQRL ITIEDAAELQ LRQSHVVRLE TRPGNVEGSR EVGSRELLRN
ALRMRPDRII LGEVRGVEAV EMLQAMSTGH DGSMATIHGN SPRDAFSRLE MLLGFAGLQN
DIRATRRFIA SSVHLLVHVQ RLTNGSRRIM SVTEVTGIEG EAYSLNELFS FEEQPPMSGL
GEFRTSSYRP HFADRIGNYR DERKDQRLW
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