| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3106 |
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| Symbol | |
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| ID | 5196786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 3414729 |
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| End bp | 3415856 |
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| Gene Length | 1128 bp |
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| Protein Length | 375 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640582654 |
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| Product | hemolysin-type calcium-binding region |
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| Protein accession | YP_001263593 |
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| Protein GI | 148556011 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.249503 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCAGA TATTTCCCAT GGGCGGCAAC GCGCTGCGCA TGGATTTCGC CTTCAGCTGG
ATACTCTTCC ACGGGACCGT CGTTACGCAG ACGAGCCGTT CCTACGTCGT GGATGCCATC
GAGGGCCATC GCTATGTCTT CGGCGGCGAA GGGCTGACCT ATGACTCGTC GGGATGGCCG
ATCGGCGGGA CCTTCCGCAG TTTCGAGTTC GTTCTGAACG GAACGACGAT CTATACCCAG
AATGGTAGCT TCGCCATGGA CGCAACGCTG CTCAAACCCG CGCTGATGCG CGGTGAGGAC
CCCGTCAAAT TCCTGCTGCC GGGCGCCGAC GATCTGCACG GCAGCGAAGG CGACGACTTT
ATCGTCGACC CGGCGGGTCA CAACAACTTC TACGGCGGTG GTGGCAATGA CACGATCTCC
GCCGGCGCAG GTAACGATCA CATCTATGGC CGTTCAGCGG CGGGCGGCGA TGATGGCGAC
GACCAGATTT GGGCCGGCGA TGGTGCCAAT TATGTCCAGG GCAATGCCGG CGACGACGAG
ATTCTGGCAG GGTCGGGGCC GGACCGGATT CAGGGTGGGG CCGGCAACGA CCGGATCCAG
GCTGGCGACG GCAATAATAT CGTCAACGGC AACCGCGGCG ACGACGAAAT TCGGGCGGGC
TATGGCGACG ACCTGCTGCG CGGGGGCCAA GGCAATGATC TGATCGAGGG GTTCGTCGGG
AACGATACGT TGATGGGCGA TCTCGGCGCC GACTATCTGA TCGGCGGTGA GGGGAACGAC
CTGTTTGTCT TCGGACCCGG CACCAGCACG ATCGCTTCCG TCGTCGACGA GGTCACCGAT
AGGATCGCCG ATTTCGAGCG AGGCATCGAT CACATCGATC TGGGCTTCCA TGTCGAAGCC
TTGCTCCTCG GCGAAATCCG CAGTCCGCTC AGTGCGGACC ATACGATCGA GAATGCACGG
GCCGTGGCCC AGGCATTGTT CGACGCCCAC CCCGGACGCA ATGAAGTGGC GGTGATCGAC
AGCAGCGGAC TGTGGATGTT CTGGTCGTCG TCGAACGGCG ACATCATCGA TTCGGTCGCT
GCCATCGGCG GATACTCGAC ACCGATCACG CTGGACGATT TCTTGTAG
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| Protein sequence | MTQIFPMGGN ALRMDFAFSW ILFHGTVVTQ TSRSYVVDAI EGHRYVFGGE GLTYDSSGWP
IGGTFRSFEF VLNGTTIYTQ NGSFAMDATL LKPALMRGED PVKFLLPGAD DLHGSEGDDF
IVDPAGHNNF YGGGGNDTIS AGAGNDHIYG RSAAGGDDGD DQIWAGDGAN YVQGNAGDDE
ILAGSGPDRI QGGAGNDRIQ AGDGNNIVNG NRGDDEIRAG YGDDLLRGGQ GNDLIEGFVG
NDTLMGDLGA DYLIGGEGND LFVFGPGTST IASVVDEVTD RIADFERGID HIDLGFHVEA
LLLGEIRSPL SADHTIENAR AVAQALFDAH PGRNEVAVID SSGLWMFWSS SNGDIIDSVA
AIGGYSTPIT LDDFL
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