Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_2907 |
Symbol | |
ID | 5199201 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 3193160 |
End bp | 3194683 |
Gene Length | 1524 bp |
Protein Length | 507 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640582457 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_001263397 |
Protein GI | 148555815 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.332311 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGCTCG GTCCCCGCCT CGACCTTCGG CAGAGCCAGT CGCTGGTGAT GACGCCGCAG CTCCAGCAGG CGATCAAGCT GCTGGCGCTG TCCAACCTCG AGGTCGAGGC GTTCATCGCC GAGGAGATCG AGAAGAACCC GCTGCTCGAA AGCGGTGGCG GGGAGGCGGG CGATCGCGAC GAGGCGCCGG GCGGCGACGA GGCCTTCGAT GATGACGGCT TCCGCAGCGA CGGCTTCGAC GAGGAAGGCC CCACCGCCGA CCGGCTGGTC GAGACCGGTG ACGCGATCGC CGACGCCCCG CTCGACGTCG ACTATGCGGC CGAGACCTTC CATCATGACA GCGCTGCCGA CAGCCCGCGC GGCATGGACG GCAGCCTGGG GATGGAGGGC GTCGCCGGCG GCGGTTCCGA GGAAGGGCGC GGGCTCGACG ACTATGCGGC GGCGACGCTC TCGCTCCACG ACCATCTGAC CGCGCAGGCG GGCGAGCTGC TCGACGGGTT CGAGCTGGCG ATCGCCGCGC GGATCATCGA CCTGATCGAC GAGGCCGGCT ATTTCGAGGG CCAGACCTTC GAGATCGCCC AGGCGCTCGA CGTGCCGCTG TTCCATGTCG AACGCGTGCT CGGGGTGATC CAGGCGCTCG ACCCGACCGG GGTCGGCGCC CGCTCGCTCG CCGAATGCAT CGCGCTCCAG GCGAAGGAGG CCGATCGCTA CGACCCGGCG ATGGCCAAGC TGATCGACAA TCTCGACCTG CTCGCGCGCG GCGCGATCCC GCAGCTCCGC CGGCTGTGCG GGGTCGACGA GGAGGACATG GCGGACATGA TCCGCGAGCT GCGCGACTAT GATCCCAAGC CCGGCCTGCG CTTCGGCGGC GAGCCGCCCG CGCCGGTCAC CCCCGACATC TTCGTCCGGC GCACCGCCGA CGGCTGGGCG ATCGAGCTCA ACGCGGCGAC GCTGCCGCGG CTGATCGTCA ACCGGGCCTA TTATGCCGAG CTGTCGAGCG GGCCGCAGGA CAAGGGCAGC AAGGCGTGGC TCGGCGAATG CCTCGCCTCG GCCAACTGGC TGGTCAAGGC GCTCGACCAG CGCGCGCGGA CGATCGTCCG GGTCGCGCGC GAGATCGTCA AGCAGCAGGA GGCCTTCTTC CTCCACGGCG TCGAGCATCT CCGCCCGCTG ACGCTGAAGG CGGTGGCCGA CGCGATCGGC ATGCACGAAT CGACGATCAG CCGGGTCACC TCGAACAAAT ATCTGATGGG CGAGCGCGGG CTGCACGAGC TCAAATATTT CTTCACCAGC GGGGTCGCGG CGGCCGACGG CGGCGACGCC GTCTCGGCCG AGGCCGTGAA GAGCCAGATC GCCAAGCTGA TCGCCGCCGA GGGCGACGAC ATCTTGTCCG ACGACAAGCT GGTCGAGCTG CTCAAGGACA AGGGCTTCGA CCTCGCCCGC CGCACCGTCG CCAAATATCG CGAGGCGATC GGCCTGGGCT CGTCGGTTCA GCGCCGGCGG CAGCGGGCAA TGAAGGCGGC GTAA
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Protein sequence | MALGPRLDLR QSQSLVMTPQ LQQAIKLLAL SNLEVEAFIA EEIEKNPLLE SGGGEAGDRD EAPGGDEAFD DDGFRSDGFD EEGPTADRLV ETGDAIADAP LDVDYAAETF HHDSAADSPR GMDGSLGMEG VAGGGSEEGR GLDDYAAATL SLHDHLTAQA GELLDGFELA IAARIIDLID EAGYFEGQTF EIAQALDVPL FHVERVLGVI QALDPTGVGA RSLAECIALQ AKEADRYDPA MAKLIDNLDL LARGAIPQLR RLCGVDEEDM ADMIRELRDY DPKPGLRFGG EPPAPVTPDI FVRRTADGWA IELNAATLPR LIVNRAYYAE LSSGPQDKGS KAWLGECLAS ANWLVKALDQ RARTIVRVAR EIVKQQEAFF LHGVEHLRPL TLKAVADAIG MHESTISRVT SNKYLMGERG LHELKYFFTS GVAAADGGDA VSAEAVKSQI AKLIAAEGDD ILSDDKLVEL LKDKGFDLAR RTVAKYREAI GLGSSVQRRR QRAMKAA
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