Gene Swit_2907 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_2907 
Symbol 
ID5199201 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp3193160 
End bp3194683 
Gene Length1524 bp 
Protein Length507 aa 
Translation table11 
GC content70% 
IMG OID640582457 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_001263397 
Protein GI148555815 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.332311 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCTCG GTCCCCGCCT CGACCTTCGG CAGAGCCAGT CGCTGGTGAT GACGCCGCAG 
CTCCAGCAGG CGATCAAGCT GCTGGCGCTG TCCAACCTCG AGGTCGAGGC GTTCATCGCC
GAGGAGATCG AGAAGAACCC GCTGCTCGAA AGCGGTGGCG GGGAGGCGGG CGATCGCGAC
GAGGCGCCGG GCGGCGACGA GGCCTTCGAT GATGACGGCT TCCGCAGCGA CGGCTTCGAC
GAGGAAGGCC CCACCGCCGA CCGGCTGGTC GAGACCGGTG ACGCGATCGC CGACGCCCCG
CTCGACGTCG ACTATGCGGC CGAGACCTTC CATCATGACA GCGCTGCCGA CAGCCCGCGC
GGCATGGACG GCAGCCTGGG GATGGAGGGC GTCGCCGGCG GCGGTTCCGA GGAAGGGCGC
GGGCTCGACG ACTATGCGGC GGCGACGCTC TCGCTCCACG ACCATCTGAC CGCGCAGGCG
GGCGAGCTGC TCGACGGGTT CGAGCTGGCG ATCGCCGCGC GGATCATCGA CCTGATCGAC
GAGGCCGGCT ATTTCGAGGG CCAGACCTTC GAGATCGCCC AGGCGCTCGA CGTGCCGCTG
TTCCATGTCG AACGCGTGCT CGGGGTGATC CAGGCGCTCG ACCCGACCGG GGTCGGCGCC
CGCTCGCTCG CCGAATGCAT CGCGCTCCAG GCGAAGGAGG CCGATCGCTA CGACCCGGCG
ATGGCCAAGC TGATCGACAA TCTCGACCTG CTCGCGCGCG GCGCGATCCC GCAGCTCCGC
CGGCTGTGCG GGGTCGACGA GGAGGACATG GCGGACATGA TCCGCGAGCT GCGCGACTAT
GATCCCAAGC CCGGCCTGCG CTTCGGCGGC GAGCCGCCCG CGCCGGTCAC CCCCGACATC
TTCGTCCGGC GCACCGCCGA CGGCTGGGCG ATCGAGCTCA ACGCGGCGAC GCTGCCGCGG
CTGATCGTCA ACCGGGCCTA TTATGCCGAG CTGTCGAGCG GGCCGCAGGA CAAGGGCAGC
AAGGCGTGGC TCGGCGAATG CCTCGCCTCG GCCAACTGGC TGGTCAAGGC GCTCGACCAG
CGCGCGCGGA CGATCGTCCG GGTCGCGCGC GAGATCGTCA AGCAGCAGGA GGCCTTCTTC
CTCCACGGCG TCGAGCATCT CCGCCCGCTG ACGCTGAAGG CGGTGGCCGA CGCGATCGGC
ATGCACGAAT CGACGATCAG CCGGGTCACC TCGAACAAAT ATCTGATGGG CGAGCGCGGG
CTGCACGAGC TCAAATATTT CTTCACCAGC GGGGTCGCGG CGGCCGACGG CGGCGACGCC
GTCTCGGCCG AGGCCGTGAA GAGCCAGATC GCCAAGCTGA TCGCCGCCGA GGGCGACGAC
ATCTTGTCCG ACGACAAGCT GGTCGAGCTG CTCAAGGACA AGGGCTTCGA CCTCGCCCGC
CGCACCGTCG CCAAATATCG CGAGGCGATC GGCCTGGGCT CGTCGGTTCA GCGCCGGCGG
CAGCGGGCAA TGAAGGCGGC GTAA
 
Protein sequence
MALGPRLDLR QSQSLVMTPQ LQQAIKLLAL SNLEVEAFIA EEIEKNPLLE SGGGEAGDRD 
EAPGGDEAFD DDGFRSDGFD EEGPTADRLV ETGDAIADAP LDVDYAAETF HHDSAADSPR
GMDGSLGMEG VAGGGSEEGR GLDDYAAATL SLHDHLTAQA GELLDGFELA IAARIIDLID
EAGYFEGQTF EIAQALDVPL FHVERVLGVI QALDPTGVGA RSLAECIALQ AKEADRYDPA
MAKLIDNLDL LARGAIPQLR RLCGVDEEDM ADMIRELRDY DPKPGLRFGG EPPAPVTPDI
FVRRTADGWA IELNAATLPR LIVNRAYYAE LSSGPQDKGS KAWLGECLAS ANWLVKALDQ
RARTIVRVAR EIVKQQEAFF LHGVEHLRPL TLKAVADAIG MHESTISRVT SNKYLMGERG
LHELKYFFTS GVAAADGGDA VSAEAVKSQI AKLIAAEGDD ILSDDKLVEL LKDKGFDLAR
RTVAKYREAI GLGSSVQRRR QRAMKAA