| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2895 |
|---|
| Symbol | |
|---|
| ID | 5200252 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 3182881 |
|---|
| End bp | 3184302 |
|---|
| Gene Length | 1422 bp |
|---|
| Protein Length | 473 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640582445 |
|---|
| Product | XRE family transcriptional regulator |
|---|
| Protein accession | YP_001263385 |
|---|
| Protein GI | 148555803 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3800] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.406623 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCGAC GCACCGGCAC CAGATTGTTC GCGGGGCACG AGCTGCGCGC GCTGCGGCAG
CGGGTCGGGC TCGGCCAGGC GGCGATGGCG GCGCGGGTCG GGCTGTCGGT CTCCTATCTG
TCGCAGCTCG AGAATGACGA CCGGCCGATC ACCCCGGCGG TGGGGGAGGC GTTCGCCAAG
GCCTTCCCGA TCGACTGGAA CCGCGACACC GCCGGCGATG CCGAGCGGCG GCTGGCGACG
CTGCGCGAGG CGTTCGCCGA CCCGCTGTTC GCCAATGCCG AGGTCGGGCC GCAGATGCTC
CACCGCATGG TCGAGCAGCA GCCGGTCTTC GCCGACCAGT TCGTCCGCCT CCACGATGCC
TGGCGCCGGG CCGAGGAACG GCTCCAGCTC GTCGACGACC GGATCGCCAG CGGCGTGCCC
GGCGACGACC GGCTGCCGTG GGAGGAGGTG CGCGACTGGT TCCACGAGGA GGGCAATTAT
GTCGACGCGA TCGACCGCGC CGCCGAGGCG CTGGCCGACG ATCTCGACGC CGAGCCGCTG
CCCGAGGCGC TGATCGCGCA TGCGCTCAAG CGGCGCCACG GGGTCGACAT CGTCACCGCG
GCCGACGACG GCGGCGGCAT GCTGCGCCGC TTCGATCCGG GGCGCGGGCT GCTGACGATC
GGATCGGCGC AGCCGCCCGA GACGCGCCGC TTCATGATGG CGCACCAGCT CGTCCAGCTC
GACCTGCGCA GCGAGATCGC CTCGGTCGCC GCCGAGGCGC GCTTCCGCGC GGCGGAGGCC
TTCCCGCTGC TGTCGGTCGG CCTCGCCAAC TATGCGGCGG GGGCGCTGCT GATGCCCTAT
CGCCGCTTCC GCGACACCGC GCGCGGGCTG CGCCACGACA TCGACCGGCT GTGCCAGCGC
TTCGGGGTCA GCTTCGAGCA GGCCTGCCAT CGGCTGTCGA CGCTCCAGCG CCCGGCCGAG
CGCGGCATCC CATTCTTCTT CTGCCGGGTC GACATGGCGG GCAACATCAC CAAGCGCCAT
TCGGCGACGC GGCTGCAATT CGCCCGCTTC GGCGGCGCCT GCCCGCTGTG GATCGTCCAC
GAGGCGGTGG CGATCCCCGA CCGCATCCTC GTCCAGCTCG CCGAGATGCC CGACGGGGTG
CGCTACGTCC AGATGGCGAA GGGGCTGGTC AAGCCGTCGG GCAGCTTCAC CCGCGCGCCG
CGCCGCTTCG CCGTCGCCTT GGGCTGCGAG GTCGAGCATG CCCGCGACTT CATCTATGCC
GACGCGCTCG ATCTCGGCAA TCCGGGGGCG GTCACGCCGA TCGGCATCTC GTGCCGGCTG
TGCCCGCGCG AGCATTGCGA CCAGCGCGCC TTCCCGCCCG CCGGCCGGCC GATCGAGGTC
GACGCCGACC GCCGCGACGT GGTGCCCTAT CGGCTGAGCT AG
|
|---|
| Protein sequence | MARRTGTRLF AGHELRALRQ RVGLGQAAMA ARVGLSVSYL SQLENDDRPI TPAVGEAFAK
AFPIDWNRDT AGDAERRLAT LREAFADPLF ANAEVGPQML HRMVEQQPVF ADQFVRLHDA
WRRAEERLQL VDDRIASGVP GDDRLPWEEV RDWFHEEGNY VDAIDRAAEA LADDLDAEPL
PEALIAHALK RRHGVDIVTA ADDGGGMLRR FDPGRGLLTI GSAQPPETRR FMMAHQLVQL
DLRSEIASVA AEARFRAAEA FPLLSVGLAN YAAGALLMPY RRFRDTARGL RHDIDRLCQR
FGVSFEQACH RLSTLQRPAE RGIPFFFCRV DMAGNITKRH SATRLQFARF GGACPLWIVH
EAVAIPDRIL VQLAEMPDGV RYVQMAKGLV KPSGSFTRAP RRFAVALGCE VEHARDFIYA
DALDLGNPGA VTPIGISCRL CPREHCDQRA FPPAGRPIEV DADRRDVVPY RLS
|
|---|
| |