| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2681 |
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| Symbol | |
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| ID | 5197712 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 2962991 |
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| End bp | 2966419 |
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| Gene Length | 3429 bp |
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| Protein Length | 1142 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 640582235 |
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| Product | double-strand break repair helicase AddA |
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| Protein accession | YP_001263175 |
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| Protein GI | 148555593 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGGGC GCCTCAAGCC GCTCGATCCG CTGCAGCCGC AGCAGCGCGC CGCCTCCGAC
CCGCGCGAGC TGGTCTGGCT GTCGGCCTCG GCCGGCACCG GCAAGACCCA CGTCCTCACC
GCGCGGGTGC TGCGCCTGCT GCTCGGCGGC GCGGCGCCCG AGGCGATCCT CTGCCTGACC
TTCACCAAGG CGGGCGCGGC CGAGATGGCC GAGCGCATCC ACCGCCGCCT CGCCCACTGG
GCGGGGCAGA AAGACGATCT GAAGCTGACC CAGGACCTCA CCCGGCTGGG CGAGGATGCC
GGGCCCGAGG CGCTGAAGCG GGCGCGGCAA TTGTTCGCGC GGGTGCTGGA GGCACCCGGC
GGCGGGCTGC GCATCCAGAC GATCCACGCC TTCTGCCAGA CACTGCTCGC CGGCTTCCCG
GCCGAGGCGG GGCTGACCCC CGGCTTCCGC CCGATCGAGG GGCGCGAGGA GGCGGCGCTC
GCCCGCCGCA CCCTCGCCGA CCTGCTCGAC GGCGCGGCGC GCGGCGGCGA CCATGGGCTG
ATCCGCGACG TCCAGGCGCT CAGCCTGCGG CTCGGCGAGG GCGGCGCCGA GGCCTATCTG
CTCGACTGCG CCCGCGCGCC CGACGCGCTG GCCGCGCTCG GCGCGCGCGG GGCGATCGAG
CCCCGGCTGC GCCACGCTTT CGACGTGCCG CTCGGCGATG TCGAGGAGGC GATCGAGGCG
GCCTGCGACG GCCTCGACCT CGCCGCTTTC GAGGCCGTCG CCCGCGCCAA CGCGACCTGG
GGCACCGCGA CCGGGCTGCG CGACGCCGAC ACCTTGGCCG CCTTCCTCGC CGCCGGTCCG
GCCGCGCGCG CGGCGATGCT GGAGGAGGTG CTGTTCGTCG TCCTCACCAA AAGCTTCGAG
CCGCGCAAAT ATGCCGCCGG GCTGCTCAAG GCCGACGCCG GCTATCCCGA CCAGTGCGTC
CGGCTCGCCG ACCAGATCGG CCGGCTGCTC GGCTGGCGCC GCCGCGCCGC GCTCGCCACC
GCGATCGGCG CGGGCCTGCG CGCCGGCCAG GCCTATGCGC AGGCCTATGC CGAGGCGAAG
CGCGCCGCCG GGCTGGTCGA TTTCGACGAC CTGATCCGCG CCACCGTCCG CCTGCTCGAC
GAGCCCGGCA TGGGCGACTG GGTGCGCTAC AAGCTCGACC AGCAGACCGA CCATATCCTG
GTCGACGAGG CGCAGGACAC CAACGCCGCG CAATGGGCGA TCGTCGGCCG GCTCGCCGAG
GAATTCTTCG TCGGCGCCGG CGCGCGCGGC GGGGCGCCGC GCACCATCTT CACGGTCGGC
GACTTCAAGC AGGCGATCTT CGGCTTCCAG GGCACCGACC CGGTCGAGTT CGAGCGCGCC
CGGCTGGGCT TCGCGATCAA GGCGCTCCAG GTCGACCGCG AGTTCCTCGA CCTGTCGCTC
GACCGCAGCT TCCGCTCGGC GCCCGCCGTG CTCGAACTGG TCGACCGGCT GATCGCCGAT
CTCGGCCATG AGGAGATGGG CCTGTTCACG CCGGCCGAGC GCCACGCCGC GCACCATGCG
ATGCCGGGCC GGGTGACGCT GTGGAAGCCG CTGTCGATCG AGGAGGCGAT GGACGACGAC
GGCGAGGAGG GCTTCATCGA CGACGCCACC CGCGCCTATG CCGGCCGGCT GGCCAGGCAG
GTGCGAAGCT GGATCGACGA GCGGCTGTGG CTGGGGAGCA AGAAGCGCCC GATCCGGCCC
GAGGACATCC TGATCCTCGT CCGCCGCCGC GCCGACCTCG CCTCGCTGAT CGTCGCCCGG
CTCCATGCCG AGAAGGTGCC GGTGGCGGGC GTCGACCGGC TGCGGCTGAC CGCGCCGCTC
GTCGTCAAGG ACCTGCTCGC CGCCGTCCGC TTCGCCGTCC AGCGCGAGGA CGACCTCAGC
CTCGCCGCGC TGCTCGTCTC GCCGCTGTTC GGCTGGAGCC AGGAGGAACT CTACCGGGTC
GGCTTCGGCC GGCGCGGGCC GCTGGTCGAC GCGGTACGGG CCAAGGGCGA CGCCGACACC
AACGCCGCGC TCGACGCGAT CCTCGCCCGC GCCGACTTCA CCACCCCCTA TCGCTTCCTC
GAACATCTGC TGACCGGCCC GCTCGATGGG CGCCGCAAGC TGCTGCGCCG GCTCGGCGAC
GAGGCGCGCG ACCCGATCGA CGAGCTGCTC GGCGCCGCGC TCCAGTTCGA GGGGACGGCG
ACCGCGACCT TGCAGCGCTT CCTCGACTGG TTCGATCGCG GCGACGTCGA GATCACCCGC
GACCCTTCCG CGCCGCTCGA CGCGGTGCGG GTGATGACCG TCCACGGATC GAAGGGGCTG
GAGGCGCCGC TCGTCATCCT CGCCGACGCG ACCGCCGATC CCGACCTCAG CCCCGACCGG
CGGCTCGACT GGGCGATCGA GGAAGGCGCC GAGCCAGTGC CGGTGCTGCG CCCGCGCAAG
GCCGAGATGG TCGAGGCGCT GCGCAAGGAC GCCGAGGCGC TCGCCAAACG CGAGCGGCAG
GAGCATTGGC GGCTGCTCTA CGTCGCGCTG ACCCGCGCGC AGGAGCATCT GGTGATCGGC
GGCACGCTCG GCGTCCGCGC GCGCGGCGTT CCCCCGGCGT CGAGCTGGTA CCAGGCGATC
GACCAGGCGA TGGCCGGCCT GGGCTGTCCG CCGGTCGAGG ACCCGCTGTG GGTCGAGGCG
CGGCATTATC ACGGCTCGGT GGCGGCGACC GGGACGACCG CGCCCGCGCG GCCGAGGCGC
GGCGCGCCGG TGCTGGCCGA ACCCGGCTGG CTGCGCCGCC CCGCCCCGCC CGAGGCGCGC
CCGCCGCGTC CGCTCGCGCC CTCGTCGCTC GGGCTCGACG ATGTGCCCGA TCCGCCGCCC
TCGGCCGCGC TGCGCGCCGC CGCCCGGCGC GGCACCCTGC TCCATGCGCT GTTCGAGCGG
CTCCCCGCCA TCGATCCCGA TCGCCGCCGC GACGCCGCGC TGCGTTGGCT GCTCGGCTCG
GCCGGGGTCG AGGAGGCGGG CATCGCCGGC GCGTTGGCCG ACGACGCCTG CCGCGTCATC
GCCGACCCGC GCTTCGCCGC GATCTTCGGC GCCGACGCGC TCGCCGAGGC GCCGGTCGCG
GCGGTGGTCG CGGGGGAGGT TGTCTCAGGC ACGGTCGACC GGTTGCTGGT CGCCGCCGAC
CGCATCCTCG TCGTCGACTT CAAGACCGGC CGCCGCGCGC CCGCCGACCT CGCCGCCGTA
CCCGATCATC ATCTGCGCCA GATGAGCGCC TATGCCGCCG CGCTCGGCGT GATCTTCCCC
GGCCGGCCGG TCGCGGCGGC GCTGCTCTAC ACCGCCGGCC CGACCCTGAT CGAGCTGCCC
GCCGCCGTGC TGGACGCGCA CAAGCCCGGC TTTAGGGGGC AGGAGCAAAA GCAGGGCCAA
GGCCGTTGA
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| Protein sequence | MSGRLKPLDP LQPQQRAASD PRELVWLSAS AGTGKTHVLT ARVLRLLLGG AAPEAILCLT
FTKAGAAEMA ERIHRRLAHW AGQKDDLKLT QDLTRLGEDA GPEALKRARQ LFARVLEAPG
GGLRIQTIHA FCQTLLAGFP AEAGLTPGFR PIEGREEAAL ARRTLADLLD GAARGGDHGL
IRDVQALSLR LGEGGAEAYL LDCARAPDAL AALGARGAIE PRLRHAFDVP LGDVEEAIEA
ACDGLDLAAF EAVARANATW GTATGLRDAD TLAAFLAAGP AARAAMLEEV LFVVLTKSFE
PRKYAAGLLK ADAGYPDQCV RLADQIGRLL GWRRRAALAT AIGAGLRAGQ AYAQAYAEAK
RAAGLVDFDD LIRATVRLLD EPGMGDWVRY KLDQQTDHIL VDEAQDTNAA QWAIVGRLAE
EFFVGAGARG GAPRTIFTVG DFKQAIFGFQ GTDPVEFERA RLGFAIKALQ VDREFLDLSL
DRSFRSAPAV LELVDRLIAD LGHEEMGLFT PAERHAAHHA MPGRVTLWKP LSIEEAMDDD
GEEGFIDDAT RAYAGRLARQ VRSWIDERLW LGSKKRPIRP EDILILVRRR ADLASLIVAR
LHAEKVPVAG VDRLRLTAPL VVKDLLAAVR FAVQREDDLS LAALLVSPLF GWSQEELYRV
GFGRRGPLVD AVRAKGDADT NAALDAILAR ADFTTPYRFL EHLLTGPLDG RRKLLRRLGD
EARDPIDELL GAALQFEGTA TATLQRFLDW FDRGDVEITR DPSAPLDAVR VMTVHGSKGL
EAPLVILADA TADPDLSPDR RLDWAIEEGA EPVPVLRPRK AEMVEALRKD AEALAKRERQ
EHWRLLYVAL TRAQEHLVIG GTLGVRARGV PPASSWYQAI DQAMAGLGCP PVEDPLWVEA
RHYHGSVAAT GTTAPARPRR GAPVLAEPGW LRRPAPPEAR PPRPLAPSSL GLDDVPDPPP
SAALRAAARR GTLLHALFER LPAIDPDRRR DAALRWLLGS AGVEEAGIAG ALADDACRVI
ADPRFAAIFG ADALAEAPVA AVVAGEVVSG TVDRLLVAAD RILVVDFKTG RRAPADLAAV
PDHHLRQMSA YAAALGVIFP GRPVAAALLY TAGPTLIELP AAVLDAHKPG FRGQEQKQGQ
GR
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