| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2596 |
|---|
| Symbol | |
|---|
| ID | 5200838 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 2879152 |
|---|
| End bp | 2880183 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640582152 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001263092 |
|---|
| Protein GI | 148555510 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAAGAAG AAAGAATAGC CGAGAAGTCT GCTGCGCGCG CCGAATGGCG GCGTCTGTAC
GACATGATCG GCAAGCTTCT GTTCGATCAC GGGCTGGAAC CGTCCCCGGC GAATTTCGAA
TTGTGCCACC GCTATCTGTC GGGTCGCGAC GCTGCGCTCA ACGCGACGAT CGACCGCGCG
ATCGCCAAGG ACGGCGGGCT GACCGACGCC GTCGCCGGTA CGATCGCCAC CCGGCTGGAC
CCCGGCCTGT CGACCGACGA ACTGTCGCGC ATGGCGCTGG AGGCGCAGGG CTATCTCGAG
CAGATGACGA CGATCCTCGC CCGCTCGGGC GAGGACGCGC GCGACTATGG CGAGGCGCTG
GCGCACGAGG CCGAGGGGCT GGCGGCGGAC GGATCGCCCG CGCTCGCGGT CAAGAAGCTG
GTCGGCCTGA CCCGGACGAT GATCGACAAG GCGCAGGCGG CCGAGGAGGA CCTGCGCCGC
ACCGAGCAGC AGATGAGCGC GATGCGCAAG GACCTCGCCG CGGCGCATCG CAAGGCGAAC
AGCGATCCGC TCACCGGCCT GCCCAACCGC CGCGCGCTCG ACCAGCATCT GCGCGGCGCG
TTCGAGAATG CCCGCCGCGC CGCCACGCCG CTCGCGCTGG CGATCTGCGA CATCGACCAT
TTCAAGCAGT TCAACGACAC CCATGGCCAC CAGATCGGCG ACGAGGTGAT CAAGTTCGTC
GCCTCCTCGC TCGGCCGCGC CGCCAGCGGC GACGTGTTCG TCGCGCGCTA TGGCGGCGAG
GAATTCGTGA TGGTGTTCGA GCGTGGCGCC GCCGCCAAGG CGATGGCGAC CCTCGACAAG
ATCCGCGCCG CGATCGCCGC GCGCGAGCTC AAGGTGACGC ACACCGGCCA GTCGCTCGGC
CGGCTGAGCT TCTCGGGCGG GCTCGCCGCG CTCGATCTCC AGGATTCGCC GGGCTCGATC
CTCAAGCGCG CCGACGCCGC GCTCTACCGG GCCAAGCAGG ACGGCCGCAA CCGCATCCAC
GCGGCGGAGT GA
|
|---|
| Protein sequence | MKEERIAEKS AARAEWRRLY DMIGKLLFDH GLEPSPANFE LCHRYLSGRD AALNATIDRA
IAKDGGLTDA VAGTIATRLD PGLSTDELSR MALEAQGYLE QMTTILARSG EDARDYGEAL
AHEAEGLAAD GSPALAVKKL VGLTRTMIDK AQAAEEDLRR TEQQMSAMRK DLAAAHRKAN
SDPLTGLPNR RALDQHLRGA FENARRAATP LALAICDIDH FKQFNDTHGH QIGDEVIKFV
ASSLGRAASG DVFVARYGGE EFVMVFERGA AAKAMATLDK IRAAIAAREL KVTHTGQSLG
RLSFSGGLAA LDLQDSPGSI LKRADAALYR AKQDGRNRIH AAE
|
|---|
| |