Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_2583 |
Symbol | |
ID | 5196742 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 2866447 |
End bp | 2867667 |
Gene Length | 1221 bp |
Protein Length | 406 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 640582139 |
Product | type II secretion system protein |
Protein accession | YP_001263079 |
Protein GI | 148555497 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1459] Type II secretory pathway, component PulF |
TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 0.711368 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGGCCT TCGCCTATCG CGCGGTCGAC ATACGGGGCG CCGCGAAGCA GGGGGTGATC GAGGCGTCGA GCCCCGCCGC CGCGCGCCAG CTGCTTCGCG ACCGCGAGCT GCTGCCGACC GCGGTCGAGG CGGCGACGGC GGGCGGCGCG GCGCCCGGCA TCGGCGCGCG GCTGTTCCGC CGCAGGGTCG GCGCCCGCGC GCTCGCCACC GTCACCCGCC AGATCGCGAC GCTGGTGACG AGCGAGGTCA ATATCGAGCA GGCGCTCAAG CTCGTCGCCG AGCAGGCCGA GGGCGCGGCG CTCCGCTCGC TGCTGCTCGA CGTGCGCGGC GCGATCCTCG ACGGCTACAG CTTCGCCGCC GCGCTGCGCC TGCACCCGGC GACCTTTCCG GAATTCTACA CCGCCTCGGT CGCGGCGGGC GAGCAGGCGG GGCGGCTGGC GCAGGTGCTC GCCCATCTCG CCGACTTCGT CGAGAACCGG CAGCGCAACC AGCAGAAGAT CCAGCTCGCC CTGCTCTATC CGGCGCTGCT CGCGGTCGTC TCGTTCGGGA TGATGGCGCT GCTGATGGTC TATGTCGTGC CCGACATCGT CCGCGTCTTC ATCTCGCGCG GGGCGGAGCT GCCCTTCCTC ACCCGCGCGC TGATCGCGAT CTCGGGCGGC TTGCAGAAAT ATGGGCTGGC GATGGCGATC GCGCTGCTCG GCGCGATCCT GATCGGCGGG CGCTGGCTGC GCGTGCCGGC CAACCGGTTG CGCTTCGACC GGCGGATCGC CACGACCTGG CCGGTCGCGC GGTTCAGTCG CCAGTACAAC GCCGCGCGCT TCGCGGCGAG CCTCGCCACC CTCGTCCAGA GCGCGGTGCC GCTGGTCGAC GCCCTCAACG CCGCCGCCGC CGTCACCCCC AACCGCTATG TCCGCGAGGC GGCGATCGGC GTCGCGACGC GGGTGCGCGA GGGGGCGAGC CTGCAGGCGG CGATGGGCGA ATCGGGCATC TTCCCGCCGA TGCTGGTCGC GATCGTCGCC AGCGGCGAGA ATGGCGGCCA GCTCGGCCCC GCCCTCGCCC GCGCCGCCGC CGAGCTGGAG CGCGAGATGG AGGCGATGGC GGCGCTGCTC GTCTCGCTGG TCGAGCCGCT GGTGCTGCTG ATGATGGGCG GGCTGGTGCT GCTGATGGTG CTGGCGATCC TGCTGCCGAT CATCAACCTC AACAATATCG TGGGGATGTG A
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Protein sequence | MPAFAYRAVD IRGAAKQGVI EASSPAAARQ LLRDRELLPT AVEAATAGGA APGIGARLFR RRVGARALAT VTRQIATLVT SEVNIEQALK LVAEQAEGAA LRSLLLDVRG AILDGYSFAA ALRLHPATFP EFYTASVAAG EQAGRLAQVL AHLADFVENR QRNQQKIQLA LLYPALLAVV SFGMMALLMV YVVPDIVRVF ISRGAELPFL TRALIAISGG LQKYGLAMAI ALLGAILIGG RWLRVPANRL RFDRRIATTW PVARFSRQYN AARFAASLAT LVQSAVPLVD ALNAAAAVTP NRYVREAAIG VATRVREGAS LQAAMGESGI FPPMLVAIVA SGENGGQLGP ALARAAAELE REMEAMAALL VSLVEPLVLL MMGGLVLLMV LAILLPIINL NNIVGM
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