| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2427 |
|---|
| Symbol | |
|---|
| ID | 5196444 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 2698055 |
|---|
| End bp | 2699161 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640581974 |
|---|
| Product | HhH-GPD family protein |
|---|
| Protein accession | YP_001262924 |
|---|
| Protein GI | 148555342 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0122] 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.610261 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.215219 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGACCGC CGGCGCTTGA GGCCAAACAA AAAAGGATCG GGCCTCGGCC CGATCCCAGC
AGCTCAATCT TCCGGCGCGA TCGTGACGGT CAGGCCGTCG AGCTCGTCGG TCATGGTGAG
CTGGCACGAC AGGCGCGAGC GGTCGTCGCG ATGGTCGCTG CTGTCGAGCA GGTCGTTCTC
GTCGTCGCTC ATGTCGGGGA GCAGGCCGTT GAAGGCCGGA TCGACGAACA CATGGCAGGT
CGCGCAGGAG CAGCAGCCGC CGCACAGCGC CAGCAGCTCG TCGATTCCGG CGTCACGGAT
GACCTCCATC ACCGACAGGC CGGTCTCCGC TTCGATGACC GATTCCTCAC CCTCACGCGT
AACGACAACC AACTTGGGCA TTACCACTCC CCCGATTTGC ATAATCCGGA TTTCGCGCGC
CTATGTAGCG CGGGACCGGT GAAATCAAGA GCAGGAACCG AAATGAGCCT TTCCGCCGAA
CAGCTCCACC GGAGCATCGA TGCGCTGGCG GGCATCGAAC CGGCCATCGC GCGCATGCTG
GAAGCGATCG GCTACCCCCC GCCGCGCATC CGCGATCGCG GCTACCAGAC GCTGCTGCGG
ACGATCGTCG GCCAGCAGGT GAGCGTCGCC GCCGCCAATG CGATCTGGGC GAAGATGGAG
ACGATGGTCG GTGCCGGCCT CGCCCCCGAG GCGGTCGCCG CCGCCCCCGA CGACCTGCTC
CGCGCCACCG GCCTGTCGCG GCAGAAGATC GCCTATGCCA GGAGCCTGGC CGAGCATGTC
GCGAGCGGCA CGATCGATTT CGACAGGCTG CCCGCCGACG ACGAGGAGGC GATCGCACAG
ATGACCGCGA TCAAGGGGAT CGGCCGCTGG TCGGCGGAGA TCTACCTGCT GTTCGCCGAA
GGGCGCGGCG ACGTCTGGCC GGCCGGCGAC CTCGCCGTGC AGATCGAGGT CGGCCGCCTG
CTGGGCCTGC CCGAGCGGCC GAGCGAGCGC GAGACGCGGC GCCTGGCGCA TGGCTGGAGC
CCGCATCGGG GCGCCGCCGC GATCTTCGCC TGGCATAGCT ACAACGCGCG CGCCAGCACG
GCCAAGACCG ACAAGATGCC GCTCTGA
|
|---|
| Protein sequence | MRPPALEAKQ KRIGPRPDPS SSIFRRDRDG QAVELVGHGE LARQARAVVA MVAAVEQVVL
VVAHVGEQAV EGRIDEHMAG RAGAAAAAQR QQLVDSGVTD DLHHRQAGLR FDDRFLTLTR
NDNQLGHYHS PDLHNPDFAR LCSAGPVKSR AGTEMSLSAE QLHRSIDALA GIEPAIARML
EAIGYPPPRI RDRGYQTLLR TIVGQQVSVA AANAIWAKME TMVGAGLAPE AVAAAPDDLL
RATGLSRQKI AYARSLAEHV ASGTIDFDRL PADDEEAIAQ MTAIKGIGRW SAEIYLLFAE
GRGDVWPAGD LAVQIEVGRL LGLPERPSER ETRRLAHGWS PHRGAAAIFA WHSYNARAST
AKTDKMPL
|
|---|
| |