| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2282 |
|---|
| Symbol | |
|---|
| ID | 5196847 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 2537226 |
|---|
| End bp | 2537822 |
|---|
| Gene Length | 597 bp |
|---|
| Protein Length | 198 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640581828 |
|---|
| Product | NAD(P)H dehydrogenase (quinone) |
|---|
| Protein accession | YP_001262779 |
|---|
| Protein GI | 148555197 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1182] Acyl carrier protein phosphodiesterase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 44 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.142259 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAGTC CCCTCATGAA ACTCCTCCAC CTCGATTCCT CGATCCAGGG CGATGCCTCG
GCCAGCCGGC ACCTGTCGGC GGCGGTGGTC GACCGCCTCC AGGCGCTGCA TCCGGCGCTC
GACATCGCCT ATCGCGACCT CGCCGCCGAT CCGCTACCGC ACATCGTGCC GGCCGGCTTC
GCCACCCCCG AGGCCGCCGC TTTGCTCGAC CAGTTCCTCG CGGCCGACAT ATTGGTGATC
GGCGCGCCGA TGTACAATTT CGGCCTGCCG AGCCAGCTCA AGGCCTGGTT CGACCATATC
CTCGTCGCCG GCAGGACCTT CCGCTACACC GAGGCCGGCG CCGAAGGCCT GGCCGGCGGC
AAGCGCGCGA TCGTCGCGCT GTCGCGCGGC GGCTTCTATT CGGAGGGCCA CCCCGGCGCC
GCCTTCGAAC ATGCCCAGAG CCATATCGGC GGGATGCTCG GCTTCATCGG CATCCAGCCC
GAATTCGTCG TCGCGGAGGG CGTCGCCTTC GGCCCCGAGC AGCGCGCCGC CGCGATCGCC
GCCGCCGAGG CGCATATCGC CACGCTCGAA CCCGTCGCGC TGCGGACCGC CGCCTGA
|
|---|
| Protein sequence | MDSPLMKLLH LDSSIQGDAS ASRHLSAAVV DRLQALHPAL DIAYRDLAAD PLPHIVPAGF
ATPEAAALLD QFLAADILVI GAPMYNFGLP SQLKAWFDHI LVAGRTFRYT EAGAEGLAGG
KRAIVALSRG GFYSEGHPGA AFEHAQSHIG GMLGFIGIQP EFVVAEGVAF GPEQRAAAIA
AAEAHIATLE PVALRTAA
|
|---|
| |