Gene Swit_2278 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_2278 
Symbol 
ID5196485 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp2534029 
End bp2535150 
Gene Length1122 bp 
Protein Length373 aa 
Translation table11 
GC content68% 
IMG OID640581824 
ProductOmpA/MotB domain-containing protein 
Protein accessionYP_001262775 
Protein GI148555193 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins
[COG3637] Opacity protein and related surface antigens 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.144858 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTAGAT TAGCCCTATT GACCGCGCTT GCCGCGACGG CGCTCGCGGG GCCCGCGTTC 
GCGCGCGACA ACAGTTGGTA TGTCGGTATC GAAGGCGGCC TGATGCAGCC GCAGGATACC
AAGTTCAACG TCGGCCCGTC GCCTTTGTCG CCGGGCGGCC GGACGACGAT CGACAACAAG
CTCGGTTATG ACGTCGATGC CATCCTCGGC TACGACTTCG GCATGTTCAG GCTGGAGGAG
GAAATCTCCT ACAAGCGTGA TCGCGTGAAG GGCATCACCA CCGGCCCGTC GCGCACCCCC
GCCGGACCGG GCGGCTTCGG CGCGCCTCCG GGCGTCTATC CGGACGCCTC GGGCAAGAAC
ATCTCCTTCG GCGTGATGCT CAACGGCCTG CTCGACTTCG GCAACGAGGA CGGCCTGTCG
GCCTATGTCG GCGGCGGCGC CGGCATCGCC GCGCTCAAGC TCCACAATTA CAATGTCTCC
GGCGGGGACT TCCTCGACTA TGACCTGTCC AAGCGCTTCG CCTGGCAGGC GATCGCCGGC
GTCCGCTACG CGGTCAGCAG CCATGTCGAT GTCGGTCTGA AATATCGCTA CTTCAACGTC
ACCAAGGTGC GCCCGGTCGA CGTCGTCGGC GCGCAGTACA GCGGCAAGTG GCGCTCGCAC
AGCGCGCTGC TCAGCCTGAT CTACAACATC GGGTCGCCGG CCGCTCCGCC GCCGCCTCCC
CCGCCGCCCC CGCCTCCTCC TCCGCCCCCG CCTCCTCCGC CGCCGCCTCC GCCGGTGGTC
GAGACCCCGG GTCCGTTCAT CGTGTTCTTC GACTGGGACA AGTCGGACAT CACGGCGGAA
GCCGCGTCGA TCCTCGACAA TGCGGCCAAT GCCTATGCGA CGACCGGCCA GGCGCGGGTC
CAGCTTGCCG GCCACGCCGA CAAGTCGGGC AGCGACCAGT ATAATGTCGG CCTGTCGCAG
CGCCGCGCCG ACTCGGTGAA GGCCTACCTC GCCGGCAAGG GCGTGCCCGA CTCGGCGATC
ACGACCGAGG CGTTCGGCGA AAGCCGCCCA CTGGTCGAGA CCGCCGACGG CGTCCGCGAG
CCGCAGAACC GCCGCGTCGA GATCACCTAC GGCGGCATGT AA
 
Protein sequence
MRRLALLTAL AATALAGPAF ARDNSWYVGI EGGLMQPQDT KFNVGPSPLS PGGRTTIDNK 
LGYDVDAILG YDFGMFRLEE EISYKRDRVK GITTGPSRTP AGPGGFGAPP GVYPDASGKN
ISFGVMLNGL LDFGNEDGLS AYVGGGAGIA ALKLHNYNVS GGDFLDYDLS KRFAWQAIAG
VRYAVSSHVD VGLKYRYFNV TKVRPVDVVG AQYSGKWRSH SALLSLIYNI GSPAAPPPPP
PPPPPPPPPP PPPPPPPPVV ETPGPFIVFF DWDKSDITAE AASILDNAAN AYATTGQARV
QLAGHADKSG SDQYNVGLSQ RRADSVKAYL AGKGVPDSAI TTEAFGESRP LVETADGVRE
PQNRRVEITY GGM