| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2118 |
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| Symbol | |
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| ID | 5199728 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 2378486 |
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| End bp | 2381572 |
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| Gene Length | 3087 bp |
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| Protein Length | 1028 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 640581663 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001262615 |
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| Protein GI | 148555033 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4995] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGGCGA TGCGCCCGGG CCGGGCCGGC GGCCTGCTCA CCGCGCTGGC GCTCGTGCTC
GCGGCGCCGC TGGCCGCCGC CGCGCCGGAC GCCGACGCGC GGCTGGCCCG GATCGAGGCG
GGGATCGGCG CCGCGACCGC CGCGCGGCGC TGGGACGAGG CGATCGCGCT CGGCCGCGAG
GCGCTGGCGA TCGAGGAGGC GAGCAAGGGC GCCGACCATC CCGAGGTGGG CGGCACGCTG
TCGCTGATCG CCGGCTGGCT GGTGCGGCAG GGCAAGCCGG CCGAGGCGAC CCCGCTCTAT
CGCCGGGCGC TCGCCATCTT CACCGCCAGG CTGGGGCCCG ACGACCGGCT GAGCGAACAG
GCCGCCTCCA ACCTCGCCGC CAATCTCCAG GCGTTCGGGC AATATGACGA GGCGGAGGGC
CTCTACCGCG CGGCGCTCGG GCGGGCGCGG GCGAAGGCGG GGGAAGAGGG GCGCGCCACC
GCGCTCGCCT ACAACAACCT CGCTTATGCG CTGGGCCGGC AGGGGCGCTT CACCGAGGCG
CGCGATCTCT ACGCCAGGGC GCTCGGCATC GCGCAGCGCT GGGAACCCGA GGATCTCGAC
CTCGCGCTGA TCGAGGGCAA CGTCGCTTCC AACCTCGACG CGCTCGGCCG GCCGATCGAG
GCGGAGCCGC TCTACCGCCA GTCGCTCGCG GTGCGCATCG CCGAGCTGGG GCCCGACGAT
CCGGCGGTCG CGACCAGCTA CAATAATCTC GGCTTCAACC TCGACGGGCA GGGGCGCCAT
GCCGACGCCG CCCCGGCCTA TCGGCGCGCG CTCGACATCC GCACCGCGAT CGACCCGGAG
GGGCTCGCCG CCGCGACCAG CTACAACAAT GCCGCGCATA ATCTGAACCG GCAGGGCGAC
TATGCCGGCG CCGCGCCGCT CTATGCCCGC GCGCTCGCCA TCTGGCAGCG GACCTATGGC
AACGATCATC CGGTGACGGC GATCGGCCTG TCCAACGTCG CGGTCAACCT GGAGCGGCAG
GGCAAGGCCG CCGAGGCGCA GCCGCTGTTC GAACGGGCGC TGGCGATCCG GCTCAGGACG
CTGCCCGCCC GCCATCCGGA CATCGCGACG GCGCGGCTGC GGCTCGGCCA TGTGCTGGCG
GCGCAAGGGC GCTTCGACGC CGCCCTGCCT TATTATGAGC AGGGCGTGGC GGCGCGGCGC
GCGGCGTTCG GGGCCGACCA TCCGGCGCTC GCCGAGGCGC TGACCGACCT CGCCGATCTC
TATCTGTCGC TCGGCCGCCC GGCCGACGCG GTGAAGGCGG CGCGCGAGGC GGCCGAGATC
GTCCGCCGCC GCCGCGCGGG CCGGATCGGT GACGCGCGCG ACAGCGACGG CGCGCAGCAG
GCGGTGGCGC GCGCCGAGGC CGCCGACGCC AGCCGCTTCG ATCCGCTGGC CGGAGCCTTC
GCCACGCTGA TCCGCGCGAG CTGGGCCGAG GCCGCCCGCG CGCCCGGCCA GGCGGCGGCA
CTGAGGGCCG AGGCCTTCCT CGCCGCGCAG GACCTGTCGG TGTCGGCCGC CGCGCGCAGC
ATGGCGCGGA CCGCCGCCCG CACCGCCGCC GGCGAGGGAC CGCTCGGCGC GCTGGTCCGG
CGCCAGCAGG ACCTGTCCGA CCGCGCCGCC GAACTCGACG CGCGGCTGCT CCGCCAGCTC
ATCGCCGGCG ACGGCGCGCG CATCGCCCAG ACCCGCGACC TGATCGCGTC CAACGCGCGC
GACCTGGCCG AGGCCGACCG CCGGCTGGCG CACGACTTCC CCAGCTATGC CCGGCTGATC
GGCGCGCAGA GCGTCGCGCT CGACGAGGCG CGCGGGCGGC TCGGCAAGGC GGACGGCCTG
CTGCTGATCG TCGCGGCGGG GGACGATCTC TACAGCTTCG CGCTGGGGTC CGGTCCCGGG
CCCGGCGACA TCCGCTGGTC GCGCCACGCC GGGGCGGCGG CGGTCGGGGA GACGGTCCGC
CGGCTGCGTT GCCAGGTCGA TCCCAAGGGC TGCGGCGACG CCGCGCCCGG CTGGCCGCCG
TTCGATCGCG CGGCGGCGTT CGGCCTCTAC CGCGACCTGA TCGCCCCGGT CGAACCGGCG
CTGGCCGGCA GCCGCGGCCT GTTCGTGGTG ACCGGCGGGG CGCTCGCCGA ACTGCCGCTC
GGCCTGCTGC CGACGGCGGC GCCGGCCACG GGGAGCGCGG ATGCGGCGGC GCTGCGCGAC
ACGCCCTGGC TGGCCGATCG CTATGCGCTG ACCGTGCTGC CGGCGGTGTC GGTGCTGCGC
GCGGCGCCCG TGATTCCGGC GGCCGCCGGC GGCGGCGGGC AGGTCCAGTT CGTCGGCTAT
GGCGCGCCCA ACTTCGTCGG CCCGGCGGGC GGCGGGCGCA ACATCGACGA TTTCCTGCGC
ATCCCGCAAC CGGTCGACCG CGCGGGACAG GGGCTGGCCG ATCCCTCCGC GCTGCGCGAG
CTGAGCCCGC TGCCGGGCAC CGAGGTCGAG CTCAAGGCGA TGGCGGCGAC GTTGAGCGCG
ACCCCCGAAC TGCTCCACCT CGGCACCGCC GCGACCGAGG GATCGGTGCG CCGCGACCAG
GCGGTCGGCA GCGCGCGGAT CATCGCCTTC GCGACCCATG GCATATTGCC GGGCGAGATC
GGCGGCCTGC GCGAGCCGGG TCTCGCCTTC ACCCCGCCCG AGACGGGATC GCCCGAGGAT
GACGGCCTGC TCGCCGCGTC GGAGGTGACG GGGATGCACC TGTCGGCCGA CTGGGTGATC
CTGTCCGCCT GCAACACCGC CACCGCCGAC GGCACTCCCG GCGCCGACAG CCTGTCGAGC
CTCGGCCGCG CCTTCCTCTA TGCCGGGGCG GGGTCGCTGC TCGCCAGCCG CTGGCGGGTC
GCCGACGACG CCACGGCGGC GCTGACGGTC GAGACGCTGG TCGCGCGCAA GGCCGGGCTC
AGCCGGGCGG CGGCGCTGCA ACGAGCGATG CGCGCGGTGC GCACCGGCCG CCGCGCCGAC
GGATCGGCGC TGCCCGGCTG GTCGCCGGCC TGGGCGCATC CGGCCGCCTG GGCGCCGTTC
ACCGTCATCG GCTCCGACGA CGGCTGA
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| Protein sequence | MRAMRPGRAG GLLTALALVL AAPLAAAAPD ADARLARIEA GIGAATAARR WDEAIALGRE
ALAIEEASKG ADHPEVGGTL SLIAGWLVRQ GKPAEATPLY RRALAIFTAR LGPDDRLSEQ
AASNLAANLQ AFGQYDEAEG LYRAALGRAR AKAGEEGRAT ALAYNNLAYA LGRQGRFTEA
RDLYARALGI AQRWEPEDLD LALIEGNVAS NLDALGRPIE AEPLYRQSLA VRIAELGPDD
PAVATSYNNL GFNLDGQGRH ADAAPAYRRA LDIRTAIDPE GLAAATSYNN AAHNLNRQGD
YAGAAPLYAR ALAIWQRTYG NDHPVTAIGL SNVAVNLERQ GKAAEAQPLF ERALAIRLRT
LPARHPDIAT ARLRLGHVLA AQGRFDAALP YYEQGVAARR AAFGADHPAL AEALTDLADL
YLSLGRPADA VKAAREAAEI VRRRRAGRIG DARDSDGAQQ AVARAEAADA SRFDPLAGAF
ATLIRASWAE AARAPGQAAA LRAEAFLAAQ DLSVSAAARS MARTAARTAA GEGPLGALVR
RQQDLSDRAA ELDARLLRQL IAGDGARIAQ TRDLIASNAR DLAEADRRLA HDFPSYARLI
GAQSVALDEA RGRLGKADGL LLIVAAGDDL YSFALGSGPG PGDIRWSRHA GAAAVGETVR
RLRCQVDPKG CGDAAPGWPP FDRAAAFGLY RDLIAPVEPA LAGSRGLFVV TGGALAELPL
GLLPTAAPAT GSADAAALRD TPWLADRYAL TVLPAVSVLR AAPVIPAAAG GGGQVQFVGY
GAPNFVGPAG GGRNIDDFLR IPQPVDRAGQ GLADPSALRE LSPLPGTEVE LKAMAATLSA
TPELLHLGTA ATEGSVRRDQ AVGSARIIAF ATHGILPGEI GGLREPGLAF TPPETGSPED
DGLLAASEVT GMHLSADWVI LSACNTATAD GTPGADSLSS LGRAFLYAGA GSLLASRWRV
ADDATAALTV ETLVARKAGL SRAAALQRAM RAVRTGRRAD GSALPGWSPA WAHPAAWAPF
TVIGSDDG
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