Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_2003 |
Symbol | |
ID | 5198751 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 2243514 |
End bp | 2244272 |
Gene Length | 759 bp |
Protein Length | 252 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 640581548 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001262501 |
Protein GI | 148554919 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.167955 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCTCG CCGGCCGCGC CGCGTTGGTG ACGGGGGCCG CGAGCGGCAT CGGCCGCGCG GTCGCCCGCG CCTTCGCCGG AGAAGGCGCG CGGGTCTGGC TGGCCGATAT GGACGCGGCC GGCGTGGCGG CGGCGGCGGA CGCGATCGGG CCGCCCGCCA GGGCGATCGA GCTGGATGTC TCCGACCCCG CAGCCGTCGG TCGAACGGTC GCGGCGATCG ACGCGGAGGC CGGGGGGATC GACCTGCTCG TCAACGCCGC CGGACGCTAC GCCCTCCAGC CCTGGCTGGA GATCGAGCCC GAGACCTGGG ACCGGATCTT CGCCGTCAAC ACCCGCGGGA TCATGCTCAC GACGCAGGCC GTGGCGCGCG TGATGGCCGC GCGCGGAAAG GGCGGATCGA TCATCAACAT CGCCTCGGCC GCGGGCCGTC GCGGCGATCC CAATTCGGTC GCCTATTCGG CGAGCAAGGC CGCCGCGATC AGCATCACCC AGTCGGCGGC GCTCGGCCTC GCCCCCCATG GCATCCGCGT CAATGCGATC GCCCCCGGCC CGGTCGACAC GCCGATGTGG GACGAAGTCG TCCGGCTGCG GGCGGGACGC GGCGATCATA GCGCCGAGCA GATGGCGGCG CGGGTGCCGC TCGGCCGCAT CTCGGCGCCG GAGGAGCAGG CGCGGGTCGC CCTGTTCCTG GCCGGCGCCG ACAGCGGCTA TGTCACCGGG CAGACCTTCA ATGTCGATGG AGGCCTGTTT CCGAGCTGA
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Protein sequence | MTLAGRAALV TGAASGIGRA VARAFAGEGA RVWLADMDAA GVAAAADAIG PPARAIELDV SDPAAVGRTV AAIDAEAGGI DLLVNAAGRY ALQPWLEIEP ETWDRIFAVN TRGIMLTTQA VARVMAARGK GGSIINIASA AGRRGDPNSV AYSASKAAAI SITQSAALGL APHGIRVNAI APGPVDTPMW DEVVRLRAGR GDHSAEQMAA RVPLGRISAP EEQARVALFL AGADSGYVTG QTFNVDGGLF PS
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