| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1894 |
|---|
| Symbol | |
|---|
| ID | 5199018 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 2121489 |
|---|
| End bp | 2123177 |
|---|
| Gene Length | 1689 bp |
|---|
| Protein Length | 562 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640581439 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_001262392 |
|---|
| Protein GI | 148554810 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.474294 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACATCTT CCACCTTTGA CGCGATCGTC GTCGGCTCGG GCATTTCGGG CGGCTGGGCC
GCCAAGGAGC TGACCGAGCG CGGCGCGCGG GTGCTGCTGA TCGATCGTGG CCGCATGGTC
CGCCATGGCG AGGATTATCC GGGCGAGCAC AAGGCGCCGT GGGAATTCCC GTTCCGCGGC
TTCGGCGACC GGCTGCTCTA CGAGCGCGAC TATGCGGTGC AGCGGCGCGG GCGCGGCTTC
GAGGAGGGCA GCGTCCAGTT CTTCGTCAAC GACCGCGAGC ATCCCTATCA GGTCGAGCCG
GGCACCGATT TCTCCTGGCT GCGCGGCTAT CAGGTCGGCG GGCGCTCGCT GGTGTGGGGC
CGCGCCTCCT TCCGGCTGAG CGACTTCAAC TTCGGGGAGA ACAAGCGCGA CGGCCACGGC
ATCGACTGGC CGATCCGCTA TGCCGACGTC GCGCCCTGGT ACGACCATGT CGAGCGCTTC
ATCGGCGTCA GCGGCGCGCG CGAGGGGATC GACGAGCTGC CCGACGGCGA GTTCCTGCCG
CCCTTCGCGA TGAACTGCAT CGAGGAGCAT GCCAAGAAGG CGATCGAGAG CCGCTTCCCC
GGCCGGCGGA TGATCAACGA GCGGACCGCC GTGCTCAGCC GCGACCACAA CGGCCGATCG
GCCTGCCATC TCTGCGGCCC CTGCCATCGC GGCTGCTCGA CCGGCTCCTA TTTCAGCACC
CAGAGCTCGA CCCTGCCCGC CGCGCAGGCG ACCGGCCGGC TGACGATCAT GACCGACACG
ATCGTCGCCG GGGTCGACTA TGATCCGCAA TCGAAGCGCG TCACCGCCGT CCGCACGATC
AACAGCAAGA CCGGCGCGCG CGAGACGATC GGCGCGCGGC TGATCTTCCT CAACGCCTCG
ACGCTGGGCA CCATCCACAT CCTGCTCAAC TCGCGCAGCG AGAGCTTCCC CAACGGGCTC
GCCAACGGCA GCGGCGCGGT CGGCCGCGGG ATCATGGACA CGCTCAAGGG GCCGATGATC
ACCGGCACCT TCGCGGGCTT CGATCAGTTC CAGCCGGTCG GCAACCGCCC GACCGGCATC
TACATCCCGC GCTTCCGCAA CCTCGCCGGG CGGCGCGATG CCGACTTCCT GCGCGGCTAT
GGCTATCAGG GCAGCGGCAG CCGGGCGCTA TGGACGCGCG GCGTCGAGTC CAAGGCGATC
GGCCCCGCGC TCAAGGCCGA GCTGCACAAG CCGGGGCCCT GGACGATCAT GCTCGGCGGC
ATGGGCGAGC CGCTGCCCAA TTTCGACAAT GTCGTCCGGC TCGATCCCGC CCGAACCGAC
AAATGGGGCC TGCCCCAGCT GCTCGTCTCG CACCGCTGGA CCGCGAACGA GGAGCGGATG
GCACAGGACA TGGCCGACCA GGGCGAGGCG ATGCTGCGCG CCGCCGGGGC GGTGAAGGTG
GCGACGATCC GCGAGATCAA GCCGGGCGGC GAGACCAACC ATGAGATGGG CGGCGCGCGC
ATGGGCCATG ATCCGCGCGA GTCGGTGCTC AACGGCTTCA ACCAGACGCA CGACATCCCC
AACCTGTACG TCACCGACGG GAGCTGCATG ACCTCGTCGC CCTGCCAGAA CCCATCGCTG
ACCTATATGG CGCTGACCGC GCGCGCCGCC GATCATGCGA TGACCCGGCT CCAGCAGGGC
GCGCTATGA
|
|---|
| Protein sequence | MTSSTFDAIV VGSGISGGWA AKELTERGAR VLLIDRGRMV RHGEDYPGEH KAPWEFPFRG
FGDRLLYERD YAVQRRGRGF EEGSVQFFVN DREHPYQVEP GTDFSWLRGY QVGGRSLVWG
RASFRLSDFN FGENKRDGHG IDWPIRYADV APWYDHVERF IGVSGAREGI DELPDGEFLP
PFAMNCIEEH AKKAIESRFP GRRMINERTA VLSRDHNGRS ACHLCGPCHR GCSTGSYFST
QSSTLPAAQA TGRLTIMTDT IVAGVDYDPQ SKRVTAVRTI NSKTGARETI GARLIFLNAS
TLGTIHILLN SRSESFPNGL ANGSGAVGRG IMDTLKGPMI TGTFAGFDQF QPVGNRPTGI
YIPRFRNLAG RRDADFLRGY GYQGSGSRAL WTRGVESKAI GPALKAELHK PGPWTIMLGG
MGEPLPNFDN VVRLDPARTD KWGLPQLLVS HRWTANEERM AQDMADQGEA MLRAAGAVKV
ATIREIKPGG ETNHEMGGAR MGHDPRESVL NGFNQTHDIP NLYVTDGSCM TSSPCQNPSL
TYMALTARAA DHAMTRLQQG AL
|
|---|
| |