Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_1839 |
Symbol | |
ID | 5197020 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 2059851 |
End bp | 2061545 |
Gene Length | 1695 bp |
Protein Length | 564 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640581384 |
Product | 3-oxosteroid 1-dehydrogenase |
Protein accession | YP_001262337 |
Protein GI | 148554755 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.121411 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACCAGG ATTTCGACGT CGTCGTCTGC GGCGCCGGCG CGGGCGGGAT GCTCGCGGCG GTACGCCTCC ACGATCTGGG CCTGCGCGCC CTGGTGATCG AGAAATCGTC GCGATACGGC GGGACGTCGG CCACCTCGGG CGGCGGCATC TGGATCCCCG ACCACGGCAT CGGCGTCGAG CCGGACAGCC GCGAGCAGGC GCTCACCTAT CTCCGCGCCG TGTGCAAGGG CGATTATCGC GACGACAAGC TCGCCGCCTA TGTCGACCAT GGCGGGGCAA TGATCGGCTA TCTGGCGTCG ATCGGCGTGC CGATGGTCTC GATCCCCGGC TTTCCCGACT ATATCGCGCG GGCGCCGGGC GCCTCGACCG GGCGGTCGCT CTTCCCGCCA GAGCTCGACG GCGCCGCGCT GGGGGAGGAA TTCCACCGGC TGCGGGATTC GCCCAATGGA TACAAGCTGT TCGGGCGCTA TGCGCTCGAC CTCCAGCAGT CCTTCACCCT GTCGGAGCGC GCGTTCGGAT GGCAATGGAC CGCCGCGCGC ATGCTCCTCA AATACTGGCT CGACCTGCGC TGGCGCCGGA AGACGCCGCG CGACCGCCGG CTGACGATGG GCCGGGCACT GGTCGGCGGG CTGCGCAAGG CGATGCTGGA GCGGAACATC CCGCTGCTGC TCGACTGCGG CCTGGCCGGG CTTCGCGTCG AGGACGGCCG GGTGACCGGC GTCGATGCGG TATCGGGCGG CGCGGCGCGG CGCTTCACGG CGCGGGCCGG CATCATCCTC GCCGCCGGCG GGTTCGAGCA GAACCAGAAG CTCCGCGACG AACTGCTGCC GGTGGCGACG AACCGCAACT GGAGCCTCAC CCCCAGCGGC CTCAACGTCG GGGACCCGCT GATCAGCGGC ATCGCGGCGG GCGCGGCCAC CGAATCGCTC GACGCCAACT GGTGGGCGCC GAGCATGCAG CTCCCGTCGC GGACCGAGCC GAACATCGAC CTCGCCGTGC CGATGTTCTT CGACCACCGG CATCCGCACA GCCTGTGCGT GAACCGGCTC GGGCAGCGCT TCGTCAACGA AAGCTGCTCC TATGACGAGT TCGGCCAGGC GATGATCGCC GATCACCGGC GGACCGGCGC GAACATCCCC TGCTGGATGA TATTCGACGC CAGCTTCCGC CGCGCCTATC CGTGCGGCCC GATCCTGCCC GATTTCGTCA TGCCCGATCG CCGCATCCCG CACGAATGGT GGGACAGCCA TGTCTTCCGG GCCGGCAGCC TCGGCGCGCT CGCCGCGAAG ATGGACGTGC CCGCCGCGAC GCTGATCGCG TCGGTGCGCC GGATGAACGG CTTCGCGCGG GCGGGCAAGG ACGAGGAATT CGGGCGGGGC GAGAACCGCT TCGACCTGTT CTTCGGGAAG AAGGACGTCG GCCCCAATCC CTGCATGGCG CCGGTCGAGA CGCCGCCCTT CTATGCGGTG CGGATCGACC TCGGCGACCT GGGCAGCAAG GGCGGGCTGA AGACCGATGC CCGCGCTCGC GTCCTCGCCA CGACCGGCGC GCCGATCCCC GGCCTGCATG CGATCGGGAA TTGCGCCGGC TCACCCTTCG GCAACTGCTA TCCGGGCGCG GGCGGGACGC TGGGCCCCGC CACCGTGTTC GCCTATATCG CCGCCAACGA CCTCGCCGCG CAGGCTCGCC CCTAG
|
Protein sequence | MNQDFDVVVC GAGAGGMLAA VRLHDLGLRA LVIEKSSRYG GTSATSGGGI WIPDHGIGVE PDSREQALTY LRAVCKGDYR DDKLAAYVDH GGAMIGYLAS IGVPMVSIPG FPDYIARAPG ASTGRSLFPP ELDGAALGEE FHRLRDSPNG YKLFGRYALD LQQSFTLSER AFGWQWTAAR MLLKYWLDLR WRRKTPRDRR LTMGRALVGG LRKAMLERNI PLLLDCGLAG LRVEDGRVTG VDAVSGGAAR RFTARAGIIL AAGGFEQNQK LRDELLPVAT NRNWSLTPSG LNVGDPLISG IAAGAATESL DANWWAPSMQ LPSRTEPNID LAVPMFFDHR HPHSLCVNRL GQRFVNESCS YDEFGQAMIA DHRRTGANIP CWMIFDASFR RAYPCGPILP DFVMPDRRIP HEWWDSHVFR AGSLGALAAK MDVPAATLIA SVRRMNGFAR AGKDEEFGRG ENRFDLFFGK KDVGPNPCMA PVETPPFYAV RIDLGDLGSK GGLKTDARAR VLATTGAPIP GLHAIGNCAG SPFGNCYPGA GGTLGPATVF AYIAANDLAA QARP
|
| |