Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_1658 |
Symbol | |
ID | 5200380 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 1844837 |
End bp | 1845616 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640581206 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001262159 |
Protein GI | 148554577 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.0536617 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0222073 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGACG CCAGATTGCC GTTCGGCCTC GATGATCGGG TCGCCATCGT CACCGGCGCC GGGCGCGGCA TCGGCCGGGA GATCGCCCGC GTCTTCGCGC GCGCCGGTGC CCATGTCGTC GTCGCCACCC GCACCGCCGG ACCGGGCGAG GAGACGGTCC AGCTGATCGA GGCGGAGGGC GGCAGCGCCC GGCTGATGAT CGTGGATCTC GGGCAGCGCG CCGACGCCGT CTCGCTGATC GAGGAGACCG CCCGCCAGTT CGGCCGCATC GACATCGTTG TGCACAATGC CGGGGTGTTC CCCTTCGTCA CCGTCGACGA CATTTCCGAC GAGGATCTGG AAAACACCCT CAACGTCAAC CTGAAGGCCG CCTTCTGGCT GACCAAGGCG GCCGCGCCGA TCCTGCGCGC CTCGCCCTCC CCGCGCCTGC TGTTCACCTC ATCGCTCAGC GGCCCGCGCT TCTCCGCCGC GACCATGGTC CATTACGGCG CGTCCAAGGC CGGCCTCAAC GGCTTCATCA AGGGCGCGGC GATCGAATAT GGGCCCGATC GCATCACCGT GAACGGCGTC GAGCCCGGTG CCATCCTGAC CGACGCGACC AGGGCGATGG GCGGCCCCGA ACGGCAGGCT GCCGTGGCCG CCGCCATTCC CGCCCGCCGG CTCGGCGAGC CCGAGGACAT CGCCTACGCC ATGCTCTTCC TGGCGTCGGA TCAGGCCAGC TATATCACCG GGCAGACCAT CGTCGTCGAC GGCGGCATTT CGATCCGGGT GCCCGTCTGA
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Protein sequence | MTDARLPFGL DDRVAIVTGA GRGIGREIAR VFARAGAHVV VATRTAGPGE ETVQLIEAEG GSARLMIVDL GQRADAVSLI EETARQFGRI DIVVHNAGVF PFVTVDDISD EDLENTLNVN LKAAFWLTKA AAPILRASPS PRLLFTSSLS GPRFSAATMV HYGASKAGLN GFIKGAAIEY GPDRITVNGV EPGAILTDAT RAMGGPERQA AVAAAIPARR LGEPEDIAYA MLFLASDQAS YITGQTIVVD GGISIRVPV
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