Gene Swit_1541 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_1541 
Symbol 
ID5198557 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp1714821 
End bp1716092 
Gene Length1272 bp 
Protein Length423 aa 
Translation table11 
GC content67% 
IMG OID640581089 
Productvanillate monooxygenase 
Protein accessionYP_001262042 
Protein GI148554460 
COG category[P] Inorganic ion transport and metabolism
[R] General function prediction only 
COG ID[COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.00031597 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00167065 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGAAAGTC GCTGCGCGGC TGAACGGGCG ACAGGGACGG CCTTCGCCTG TGAGAAATCG 
GACGATCGAG GCGAAAATCC GGACGGAACC GCAGTAGAGG TCCTGTCCGC TCTTCCCATA
CACTCGGGCC AACTCGGGCG TCAGCGCGCG GACCGGGAAG CAACCGCCGG AGCAGGATGC
CATCTTCCCG CGCCGCGGCG ACGCCCCCCC CTTCAGAGCG GAAGAGCATC GATGACGAAC
GACCTCTATC TTCGAAATGC CTGGTATGTC GCGGCGCTGG CGGGAGAGGT CGAGGCCGAC
CTCCTGCGGC GGCTCATCCT GGGCGAGCCC GTCCTCCTTT TTCGCGACGA GCAGAGCGGC
GCCCCGTCCG CGCTGCACGA TCTCTGTCCC CATCGTTTCG CTCCGCTGAG CCGGGGCAAG
CGCGTGGATG GCGGGATTCA ATGCGGATAT CATGGGCTGG TGTTCGCGCC TTCGGGCAAA
TGCGTCCTCA ATCCGCACGG CAATGGCCGC ATTCTTCCGA CCGCGGCGGT GAGGGCGTTC
CCCGTCATCG AACGGCACGG GATGATCTGG ATCTGGATGG GTGAGCACGA CCTTGCCGAC
CCGTCGCGCA TCCCCGACTT CAGCTATCTG GACGCGGCCG ACCAGAGGAC GCGGGGCGCC
GGCTACCTGC CCACGCGCGC CAATTACCAA TTGCTGACCG ACAACATCCT CGACGCGAGC
CATGCCGACT ATCTCCATGC CCTGCTCGAT TCCGACGGCG GCACGCGCCA CGAAGCGCCC
AGGGTGCAGG AACTCGGCGA CGGCAGCGTC GAGGTGAGCT GGACCTGGGG GCCCGCCAGC
CCGATGAAGT TCCTCAGCCA TATGTACGCG CCTGGCGCGG AGGTTCACAC ACGCCTGGCG
GTGCGGTGGC ATGCGCCGAG CGCGATGCAT CTGCGGATTT CGAGCGCCGC CGAGGGCGAG
GAACTCGACC AGGGCCTGCA GGCCGAGGCG ATGCACATCA TGACGCCCGA AACGGCCCGG
CAGACCCACT ATTTCTATGG CGGCGTCAGG AGCTTCGACG TGGCCAACGA TGCCTATACC
GCGGCTTTCC TGGAGGGCGC GCGCAGAGCC TTCGCGGACG AGGACAAGCC GATGATCGAG
GCCGTCCAGG CGAACATGGG CGACGAAACC GACATCTTCG CGATGCGTCC GCTGGGGCTG
ATCGGCGATG CCGGCGGCGT GCGGGTACGG GAACGGCTGC GGCGTCTCAT TGCGGCCGAG
CGGCATCCCT GA
 
Protein sequence
MESRCAAERA TGTAFACEKS DDRGENPDGT AVEVLSALPI HSGQLGRQRA DREATAGAGC 
HLPAPRRRPP LQSGRASMTN DLYLRNAWYV AALAGEVEAD LLRRLILGEP VLLFRDEQSG
APSALHDLCP HRFAPLSRGK RVDGGIQCGY HGLVFAPSGK CVLNPHGNGR ILPTAAVRAF
PVIERHGMIW IWMGEHDLAD PSRIPDFSYL DAADQRTRGA GYLPTRANYQ LLTDNILDAS
HADYLHALLD SDGGTRHEAP RVQELGDGSV EVSWTWGPAS PMKFLSHMYA PGAEVHTRLA
VRWHAPSAMH LRISSAAEGE ELDQGLQAEA MHIMTPETAR QTHYFYGGVR SFDVANDAYT
AAFLEGARRA FADEDKPMIE AVQANMGDET DIFAMRPLGL IGDAGGVRVR ERLRRLIAAE
RHP