| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1496 |
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| Symbol | |
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| ID | 5200201 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 1652608 |
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| End bp | 1654833 |
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| Gene Length | 2226 bp |
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| Protein Length | 741 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640581043 |
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| Product | periplasmic sensor diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001261997 |
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| Protein GI | 148554415 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCTGACGG GGCTGGTGCG CCTCGGCGAT CGCGCGGGCA CCGAACCGCG CGAGGCGCTC
ACCTCCCAGA TCATCGCGCG GACGATCTTC ATCGTGCTGC TCATGGCGGC GATGCTCGGC
GGTTTCCTCT GGTACGCCGC GCGCAAGGCT GACGAACTGT CGATCGATCG TCAGCAGAAG
CTGATCGCCA CCGTCCTCGA ACAGAATTTC CGATCGATCG CGCATGACCA GGAGGTGGCG
ACCGTCTGGG ACGACGCGGT CGAGCAACTG GCGCGCCGGC CGATCGACCA GGACTGGATC
GACGATAATC TCGGCGTCTG GCTCTACACC TATTACGGCC ATGACGAGGT GTTCATCGTC
GACCCGCAGG ATCGGCTGGT TCATGCGATG CGCGGCGGCC GGCGCGAGGA CGCGGCGCGC
TATGCCCGGT CGATCGGCAC GACCGGCCGG GGGCTGATCG CCGAGCTGCG CGCCAAGATG
CGCGCCGGCG CCAAGGTATC GCGGCAGGGG ACGGTCCTCT CTCCGGGCGC GATCGACCTC
GCCACCATCC ATGGCCGTCC CGCGATCGTC AGCGCGAAGC CGATCGTCAC CGACACCGGC
GAGCGGCCGG TGCCGCCGGG GAAGGAATAT GTCCATGTCA GCATCCGCTA TCTGGACGGC
AGCTTCATCG CCGACCTCGC CCGCCGCTAT CAGCTCGAAG GAGGCCATTT CTCGCGCCGG
CCGCCGCGCG ACGCGGAAGA CAGCACGGTC GCGCTGCGGA CCCGATCGGG CGCGGGCATC
GGCTATTTCG CCTGGGAGCC CTTCCGGCCC GGCCGCGCGA TGCTGCGGCA GGTCGGCCCG
GTGCTGGTCG TATCGCTGCT GCTCGTCTTC GCGCTGGTCG CCTGGCTGTT GCGCCGGATC
AGTCGCGGCA CGCGACAGCT CAGCGCCGCC AAGTCGCAGG CCCAGCATCT GGCCGACCAT
GATCCGCTGA CCGGGCTCGC CAACCGCGCG TTGTTCGAGC GGCGGCTCAA CGAGCGACTG
GGCGAGATCT GCCTGACCGG GGAGACGCTG GCGCTGGTCT ATGTCGATCT CGACCATTTC
AAGAACGTCA ACGACCATCT CGGCCATCCG ACCGGCGACC AGCTGATCCG CGCGCTGGCG
GACATATTGA GCGAGCTGGC GCCCGGCGAT GTCGTCGCCC GGCTGGGCGG GGACGAGTTC
GCGATCATCC ACGGCTCCGA CAATTCGGCG GCGACCGCCG AGCAACTCGC GCGCAGCATC
CATCGGACGC TGGCGCGGCC GATCGACCTC GGCAATGGCG AGGTGCTGAT CGGCGCGAGC
ATCGGCGTCG CGGTGGCCCC GCAGGACGGG CTCGACCGGG TCGAGCTGGT CCGCAAGGCC
GACATCGCGC TCTACGACGC CAAGCGGGGC GGCCGCCGCC GGCACAGCTT CTATGCCGAC
ACGATGGGCG AACGCATCCG CGATCGCCAC GAGATCGAGG CGGAGCTGCG CGAGGCGATG
CGCACCGGCG AAGGGCTCGA CATCGCCTAC CAGCCCTATT TCGCCGCCAA GAGCGGGCTG
CTGCTCGGCG CCGAGGCGCT GATCCGCTGG GACCATCCGG TGCGCGGCCG GATGCTGCCC
GCCCAGTTCG TGCCGGTCGC CGAGGAGTGC GGGCTGATCG AGACGCTGGG CGAATGGGTG
CTCGAACAGG CCTGCCTGGT CGCGGCGCGC TGGCCGGCGG GCACCATCTC GGTCAACCTG
TCGGCGATGC AGCTTCGCAA TCCGGCGCTG GCCGAGCGGG TCTATGCGAT CCTGCGGCGG
ACCCGGCTGT CCCCGAGCCG GCTCGAGCTG GAGATCACCG AGACGAGCTT CGTCGACAGC
AGCGAGAAGT GCCGCGCCAA TCTCGGCTGG CTGCGCGACA TCGGCGTGCG GATCGCGCTC
GACGATTTCG GCACCGGCTA TTCCTCCTTC CGCCACCTGC GCGGCTTCGA GGTCGACCGG
ATCAAGATCG ACCGCAGCTT CGTGTCGACG ATCCAGCCGG GCCAGGCGGG CAGCCCGGTG
ATCCAGGCGA TCGTCGACCT GGCGCGGCTG AGCGGGCTCG AAACCACCGC CGAGGGGGTG
GAGACCGAGC AGCAGCGGCG CTTCCTGACG AGCATCGGCT GCGACGTGCT GCAGGGCTTC
CTGCTGGCGG AGCCGCTCGG CGCGACGGCG GTCGAGGCGC GCTTCTTCGC GGAGCTACAC
CAGTAG
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| Protein sequence | MLTGLVRLGD RAGTEPREAL TSQIIARTIF IVLLMAAMLG GFLWYAARKA DELSIDRQQK
LIATVLEQNF RSIAHDQEVA TVWDDAVEQL ARRPIDQDWI DDNLGVWLYT YYGHDEVFIV
DPQDRLVHAM RGGRREDAAR YARSIGTTGR GLIAELRAKM RAGAKVSRQG TVLSPGAIDL
ATIHGRPAIV SAKPIVTDTG ERPVPPGKEY VHVSIRYLDG SFIADLARRY QLEGGHFSRR
PPRDAEDSTV ALRTRSGAGI GYFAWEPFRP GRAMLRQVGP VLVVSLLLVF ALVAWLLRRI
SRGTRQLSAA KSQAQHLADH DPLTGLANRA LFERRLNERL GEICLTGETL ALVYVDLDHF
KNVNDHLGHP TGDQLIRALA DILSELAPGD VVARLGGDEF AIIHGSDNSA ATAEQLARSI
HRTLARPIDL GNGEVLIGAS IGVAVAPQDG LDRVELVRKA DIALYDAKRG GRRRHSFYAD
TMGERIRDRH EIEAELREAM RTGEGLDIAY QPYFAAKSGL LLGAEALIRW DHPVRGRMLP
AQFVPVAEEC GLIETLGEWV LEQACLVAAR WPAGTISVNL SAMQLRNPAL AERVYAILRR
TRLSPSRLEL EITETSFVDS SEKCRANLGW LRDIGVRIAL DDFGTGYSSF RHLRGFEVDR
IKIDRSFVST IQPGQAGSPV IQAIVDLARL SGLETTAEGV ETEQQRRFLT SIGCDVLQGF
LLAEPLGATA VEARFFAELH Q
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