| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1453 |
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| Symbol | secD |
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| ID | 5200846 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 1601344 |
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| End bp | 1602939 |
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| Gene Length | 1596 bp |
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| Protein Length | 531 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640581001 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001261955 |
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| Protein GI | 148554373 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGATT TCCCGCGCTG GAAGGTCTGG TCGATCTGTC TGCTGCTGGC GGCGGGCATC
CTGCTGTCGC TGCCCAGCTT CATCCCCGAA TCGACGATCG AGCGCGCCGG CCTGCATGGC
CTGCCGCGCA TCAACCTCGG CCTCGACCTT TCGGGCGGCA GCCACCTGAT GCTGGAGGCG
GACACCACCG ACCTCGCCAA GCAGAACATC GCGAAGATGG AGGAGCAGGT CCGCACCGAG
ATGCGCCGCG CCGATCCGCC GATCGCGATC GGCGACATCT CGACGACGGG CGGCCGCCTC
TCCTTCTTCG TGCGCGACGC CAGCCGGATC GACGCCGCGG TCGAGCGGAT CCGCACGCTG
ACCCAGCCGT CGGGCATGAC CGGCCAGCGC GACTGGGACG TGCAGGTGGT CGATTCGACC
CGCATCGTCC TGACCCCGAC CAAGCAGGGC CTGGCCCAGG CGACCGACAG CGCGATGCAG
GTCGCGACCG AAGTCGTCCG CAAGCGCATC GACGAGATGG GCACCCGCGA GCCGACGATC
ATCCGCCAGG GCGCGGAGCG CATCGTCGTG CAGGTGCCCG GCCTCCAGAA CCCGGCGGCG
CTCAAGGCGC TGCTCGGCCG CACCGCGAAG CTCGAATTCA AGCTGGTCGA CCTGACCGCC
GATCCCGCCG CCGTCGCGCA AGGGCGCGCG CCGGTGGGCA GCGAGGTCGT CGCCTATGCC
GAGCCCGGCC AGGCGCCGAT CGCGGTCAAG CGCCGCGCCA TGCTGAGCGG CGACGAGCTG
ATCGACGCCA AGCTCAGCTA CAACAGCCAG ACCAACGAGC CGGTCGTCTC GATCACCTTC
AACAGCGAAG GCGGTCGCAA ATTCGCCCGC GTCACGCAGG AGAATGTCGG CAAGCCCTTC
GCGATGATCC TCGACGGCAA GGTGCTGTCG GCGCCGAACA TCAACGAGCC GATCCTGGGC
GGACAGGCGC AGATCTCCGG CCGCTTCACC ACCGACAGCG CCAACCAGCT CGCCATCGCG
CTGCGCTCGG GCAAGCTGCC GGTCGCGCTC AAGGTGGTCG AGGAGCGCAC CGTCGGCCCC
GATCTCGGCG CCGATTCGAT CCGCGCCGGC ACCCTCGCCA GCGTGATCGC AGTGGTCGGC
GTCGTGATCT TCATGCTCGT CAGCTACGGC CGCTTCGGCT TCTACGCCAA CCTCGCCGTG
GTGATTAACG TCTTCGTGAT CCTCGGCATC ATGGCGCTGC TCAACGCGAC GCTGACCCTG
CCGGGCATCG CCGGCTTCGT GCTGACGATC GGCACCGCGG TCGACGCCAA CGTGCTGATC
AACGAACGCG TCCGCGAGGA GCTGCGCCGT GGGCGCTCGC CCACCCAGGC GGTCGAGCAT
GGCTATAAGG AAGCCAGCCG GACGATCTTC GAGGCGAACG TCACCCACGC CATTGCGGGG
CTGATCATGT TCGTGCTCGG CTCGGGCCAG GTGAAGGGCT TCGCGGTCGT TCTGCTGATC
GGCATCGCGA CCTCGGTGTT CACCGCCGTC GTCTTCACCC GCATGCTCGT CGCGCTGTGG
CTCCGCCACA AGCGGCCCAC CAGCATCCAT ATCTGA
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| Protein sequence | MLDFPRWKVW SICLLLAAGI LLSLPSFIPE STIERAGLHG LPRINLGLDL SGGSHLMLEA
DTTDLAKQNI AKMEEQVRTE MRRADPPIAI GDISTTGGRL SFFVRDASRI DAAVERIRTL
TQPSGMTGQR DWDVQVVDST RIVLTPTKQG LAQATDSAMQ VATEVVRKRI DEMGTREPTI
IRQGAERIVV QVPGLQNPAA LKALLGRTAK LEFKLVDLTA DPAAVAQGRA PVGSEVVAYA
EPGQAPIAVK RRAMLSGDEL IDAKLSYNSQ TNEPVVSITF NSEGGRKFAR VTQENVGKPF
AMILDGKVLS APNINEPILG GQAQISGRFT TDSANQLAIA LRSGKLPVAL KVVEERTVGP
DLGADSIRAG TLASVIAVVG VVIFMLVSYG RFGFYANLAV VINVFVILGI MALLNATLTL
PGIAGFVLTI GTAVDANVLI NERVREELRR GRSPTQAVEH GYKEASRTIF EANVTHAIAG
LIMFVLGSGQ VKGFAVVLLI GIATSVFTAV VFTRMLVALW LRHKRPTSIH I
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