| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1134 |
|---|
| Symbol | |
|---|
| ID | 5200145 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 1277041 |
|---|
| End bp | 1277988 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640580681 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001261638 |
|---|
| Protein GI | 148554056 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02595] PEP-CTERM putative exosortase interaction domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.0722536 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGTCA GGCTGCTTGC GCTACTGACA GCTCTGTTTG GCTGCGTAAC CGGGGGGGAG
CTTCAGGCGA CCAACCTGCT CGTCAACGGT GACTTCGAAA TGGTCACCAT GACCAATGGC
AATGCACTGC ATTCGACGAT CTTCGGGCAC GGGCTCGACA ATGCCGCTGT CGGCCCGACG
TTGAAGAACC TGCCGACCGT CACCGGCTGG ACGACGCGCG GCTATAACTT CGTCTTCGTC
GACAATCCCA GCTATAACGG GGGCTCTCCC GTCACGCAGA CCGGGGCCGA CGATTTCGGT
AGCGGCGCCT GCCTGTACGG CAATTGCGAT CCCGGCGCCC GGCTGTCGCT GTGGGGGCCG
GACATCGGGA CCAACAACGG CCTGACGAAC AGCCCGACCG GCGGCAATTT CGTCGGCGCC
GACGGCGCTT ACGGCAATGC CCCGATCGAG CAGACCATAT CGGGCCTCGA GGTCGGCAAG
GTCTACAAGC TGACCTTCTG GTGGGCGGCC GCCCAGCAGA CCACCTATGA CGGCGCCACC
CAGGACAGGT GGCAGGTCTG CTTCGGCGTG TGCGACTATT CGATCAGCCC CGATGCGCCG
ATCTTCCTCG ATTATCGCGA CGGGCATTCG ACCTACAACC TCGCCCCCGG CGACCAGCTG
CTGAGCACCG GGACGGTGAA CAATGCGAGC CATGGCTTCG TGCCCTGGCA GTTCGAGACG
ATGTATTTCA CCGCCAACGA CACCACGCAG AAGCTGTCGT TGCTCGCCTA TGGCCTGCCG
ACCGGGCAGC CGCCCTTCGC GCTGATCGAC GGCCTGAACC TCGAGGCGAT ACCGGAACCG
TCGACCTGGG CGATGATGCT GATCGGGTTC GGTCTGGTCG GCGGCATCAT GCGCAGCAAC
CGGCGCTCGC CGGTCTGCCG CGAGGTGATC AGGGCCCAGA TCGTCTGA
|
|---|
| Protein sequence | MRVRLLALLT ALFGCVTGGE LQATNLLVNG DFEMVTMTNG NALHSTIFGH GLDNAAVGPT
LKNLPTVTGW TTRGYNFVFV DNPSYNGGSP VTQTGADDFG SGACLYGNCD PGARLSLWGP
DIGTNNGLTN SPTGGNFVGA DGAYGNAPIE QTISGLEVGK VYKLTFWWAA AQQTTYDGAT
QDRWQVCFGV CDYSISPDAP IFLDYRDGHS TYNLAPGDQL LSTGTVNNAS HGFVPWQFET
MYFTANDTTQ KLSLLAYGLP TGQPPFALID GLNLEAIPEP STWAMMLIGF GLVGGIMRSN
RRSPVCREVI RAQIV
|
|---|
| |