Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_1126 |
Symbol | |
ID | 5199167 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 1270506 |
End bp | 1271753 |
Gene Length | 1248 bp |
Protein Length | 415 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640580673 |
Product | diguanylate cyclase |
Protein accession | YP_001261630 |
Protein GI | 148554048 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.926939 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTACGGCT TCTTCGCCTT GCTCGTGCAC GGCCTCATCT ATTCCGTCGT CATGGGCGCC GTTTTTCGGA CGAGGCACAG CACCGGGCTC GGCGTCTTCT TCTGCCTGCT CGGCACGATG CACTTCCTCG AGACCTATCT GGCGGCGACC TTCTTCATCG AACTGCCCTT CGGCCTGATC TCCCCCGGCT CGACCGTGAT GTTCACGGGC AAGCTCGCCT TCTTCCTGCT GCTCTACATC AAGGAGGATG CCGAGGTGAT GCGGCAGCCG ATCTACGGCC TGCTCGCCGG CAACGTCCTG ATGATCGCGC TGGGCCTGAT CCTGCGCCTC TACGGCCAGA CCGCGAACCT GCCGGGCTAT AATCCCGATT TCAACTTCGT CGACCAGATG GGCCTGCTCA TGGTCGTCGG CTCGCTATTG CTGTTCATCG ACCTGATCGC CCTCGTCATC ATCTATGAGC GGCTCGGCCG GTCGATCGCG AGAACGGTTC CGATCCGGAT GTTCATCAGC CTGGCGCTGG TCCTGAGCTT CGACCAGTTC TTCTTCTACC TCGGGCTCCA TTTCCTCGCG GGGGTGCCGC CCTCTGCCTT CTACGGGGGA TGGATCGCCA AGACCGCCGC GGCCGCCTTC TTCAGCCTGG TGATGACCGT CTATCTGCGC TTCTTCGAAC GGCAGCCGCT ACCCGCGCGG GCGCGCAGCG CGGTCGACGT GTTCGATCGG CTGACCTACC GGCATCGCTA CGAAAGGCTG GTGGAGCGGG TCGGCCGGGA TGCGCTGACC GGGCTTCTCG ATCGCGGGCA GCTCGATGCG AAGGGAACCG CGATGCTGCA GGCGGCCTCC CGTTCGAACG CGTCGCTCAG CCTGATGATG ATCGACATCG ACCATTTCAA GTCGGTCAAC GACAGCCACG GCCATGTCGT CGGCGACGGC GTGATCCGCA CGATCGCCGA GACGATCGCC GCCGCGAAGG GCGAGGGCGC CGAGCTGTTC CGCTATGGCG GCGAGGAATT CGCCCTGCTG TGTCCGCTGA CGCTCCCGGA CGCCGTGGCG TCGGCCGAGC GGATCCGGGT GGCGGTGGCC GACAGCCGCC ATCCGGAACT GGAGCGGGCG ATGACGGTGA GCATCGGCAT CGCCGCCTTC CCGGCACATG CCAGGAGCTT CTGGCAACTG ATCGAGAAGG CCGACGCCGC CCTCTATCAG GCGAAGGCGG CCGGCCGGAA CAGGATCAGT CCCGCGCTTC CTTCCTGA
|
Protein sequence | MYGFFALLVH GLIYSVVMGA VFRTRHSTGL GVFFCLLGTM HFLETYLAAT FFIELPFGLI SPGSTVMFTG KLAFFLLLYI KEDAEVMRQP IYGLLAGNVL MIALGLILRL YGQTANLPGY NPDFNFVDQM GLLMVVGSLL LFIDLIALVI IYERLGRSIA RTVPIRMFIS LALVLSFDQF FFYLGLHFLA GVPPSAFYGG WIAKTAAAAF FSLVMTVYLR FFERQPLPAR ARSAVDVFDR LTYRHRYERL VERVGRDALT GLLDRGQLDA KGTAMLQAAS RSNASLSLMM IDIDHFKSVN DSHGHVVGDG VIRTIAETIA AAKGEGAELF RYGGEEFALL CPLTLPDAVA SAERIRVAVA DSRHPELERA MTVSIGIAAF PAHARSFWQL IEKADAALYQ AKAAGRNRIS PALPS
|
| |