| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1114 |
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| Symbol | |
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| ID | 5198711 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 1253104 |
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| End bp | 1256202 |
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| Gene Length | 3099 bp |
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| Protein Length | 1032 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 640580661 |
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| Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
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| Protein accession | YP_001261618 |
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| Protein GI | 148554036 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
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| TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.425667 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAGCC TGCTTTCGAA TTGGGACATG ATCGACGCCG GCAAATATGC CGATGAGGGC
GAGGTGGTGC GTACCCTGCT CGAGCGCCAG CCGCTCGGCC CGCGGGACCG CGCCGACGTC
GTCGCCGAGG CGACCGCGCT GGTCGAGGGC GCGCGCGGCG CGACGAAGAA GCAGGGCGTG
GTCGAGAGCT TCCTCCAGCA ATTCTCGCTT GGCACGCGCG AGGGGCTGGC GCTGATGTGC
CTGGCCGAGG CGCTGCTGCG CACCCCCGAC GCCGACACCC GCGACCGGCT GATCGCCGAG
AAGATCGGAT CGGCCGACTG GGCCAGCCAT CTCGGCCAGT CGGACAGCCT GTTCGTCAAC
GCCTCGACCT GGGGGCTGAT GCTGACCGGC CGGCTCGTCG ACGTCGACGA GGAGGCGAAG
AACGACCTGG GCGGCTTCCT CAAGCGCATC ACCGCCCGGC TCGGCGAGCC GGTGATCCGC
CAGGCGGTCG GCGCCGCGGT CAAGATGATG GGCGAGCAGT TCGTGCTCGG CCGCACCATC
GGCGACGCGC TCGCCCGCGC CAGGCGCGAA GGCTATCTCT GCTCGTTCGA CATGCTGGGC
GAGGGGGCCC GCACCGCCGC CGACGCCGCG CGCTACGAGA AGATCTATGC CGATGCGATC
GAGGCGGTCG GCAAGGCGGC GGATGGCGCC GGCCCCGAAC TCGGCCATGG CGTCTCGGTC
AAGCTGTCGG CGCTGTCCCC CCGCTATGAG GCGGTGCAGG AGGCGCGCGT CTGGGAGGAG
CTCTATCCGC GCGTCAGGCG GCTCGCGCTG ATCGCCGCGC GCCACGACCT CAACTTCGCG
ATCGACGCCG AGGAGGCCGA CCGGCTCGTC ATCTCGCTGA AGATGATCGA GCGGCTGGTG
AAGGAGCCCG AGCTGGGCGA GTGGAAGGGC CTCGGCGTCG TCGTCCAGGC CTATCAGAAG
CGCGGCCTGA CGGTGATCGG CGCGCTGCGG GCGCTGGCAG AGGGCAGCGG GCGGCGGATC
ATGGTCCGGC TCGTCAAGGG CGCCTATTGG GACAGCGAGA TCAAGAAGGC GCAGGTCGCG
GGCCGGCCCG ACTATCCGGT CTTCACCACC AAGGCGGCGA CCGACCTCTC CTATCTGGTC
TGCGCCAAGG CGCTGATCGA CGCGAGCCCG GCGCTCTATC CGCAATTCGC CAGCCACAAC
GCCCACACCC TCGCGGCGGT GCGCGGCATG GCCGACGGCG CGGGCGTGAC GATCGAGCAT
CAGCGCCTCC ACGGCATGGG CGAGGCGCTC TACGCCGCCG CCGGGAAGCG ATACGGCGAG
CTGCGCCTGC GCGCCTATGC GCCGGTCGGC GGGCATGAGG AGCTGCTCCC CTATCTGGTC
CGCCGCCTGC TGGAGAACGG CGCCAACACC AGCTTCGTCC ACGCGCTGCT CGACGAGCGG
GTGCCCGCCG AGCTGGTGGT CGCCGATCCG ATCGCGGCGG TCGAGGCGCA TCCCCGGCGC
CACGCGCGGA TCGCGCTGCC GGCCGACATC TACGGCCCGT CGCGCCGCAA CCCGCCCGGC
CGCGACTATT CGCTGGTCGA GGCGCGGGGG CTGGCGGCGA AGACGGCCGT GCTGACCGCG
GGCGAGCGCG AGACCTCGGG CGCGATCATC CGGGGCCGGC TGATCGCCGC CGCCTCCGAT
CCGGTGACGA GCCCCGCCGA TCGCGGCCGG GTGATCGGCT ATGCGTCGAC CGCGACCCCC
GCCGACATCG ACCGCGCGAT CGCCGCCGCG CGCGCCGCGC AGCCCGGCTG GAACCGGCTG
GGCGGCGCCG GTCGCGCCGC CGTGCTGCGG GCGATGGGCG ACGCGCTGGA GGCGGAGATG
GACCCGCTGA TCGCGCTGCT CTCGCTGGAG GCGGGCAAGA CGCTCAACGA CGGCGTCGCC
GAGGTCCGCG AGGCGGTCGA CTTCTGCCGC TATTATGCGG ACCTGGCCGA GCGGCAGTTC
GGCGCGCCGA CGATCCTGCC CGGGCCGGTG GGGGAGACCA ACCAGCTCGA ACTGGCCGGG
CGCGGCGTCT TCGCCTGCAT CAGCCCGTGG AATTTCCCGC TCGCCATCTT CACCGGCCAG
ATCGCGGCGG CGCTGGCGGC GGGCAATGCC GTGCTCGCCA AGCCGGCCGA ACAGACCCCG
CTGGTCGCGG CGCGCGCCGT CCGCCTGTTC CACAAGGCGG GGCTCGACCC CGACCTGCTG
GCGCTGCTGC CCGGCGACGG CGCCACCGTC GGCGGCGCGA TCGTCAACCA TCCCGGGATC
GACGGCGTCG CCTTCACCGG CGGCACCGAG ACCGCCTGGG CGATCAACCG CCAGCTCGCA
GCGCGCAACG GGCCGATCAT CCCGTTCATC GCCGAGACGG GCGGCCTCAA CGGCATGTTC
GTCGACACCA CCGCGCTGCG CGAGCAGGTG GTCGACGACG TCGTCCTGTC GGCCTTCGGC
TCGGCGGGTC AGCGCTGCTC GGCGCTGCGG CTGCTGTTCG TGCCGCACGA CAGCGCCGAC
GAACTGGTCG CGACGCTGAA GGGCGCGATG GAGGCGCTCG TCATCGGCGA TCCGGCCGAT
CCCGCGACCG ACGTCGGCCC GGTGATCGAC GCCGAGGCGA AGGCGGCGCT CGCCGCGCAT
CGCGAGCGGC TGTCGCGCGA GGCGGTGATC CTGCATGAAT GCGCGGCGCC CGAGGGCGGC
GACTTCTTCG CGCCGCTGAT GGCCGAGATT CCCGCCGCCG ACTATCTGGA GCGCGAGGTG
TTCGGCCCGA TCCTCCACAT CGTCCGCTAC GACCCGGCCG ATCTCGCCAA GGTCGCGGGG
CGGCTCGCCG CGCGCGGCTA TGGCCTGACG CTCGGCGTCC ACAGCCGGAT CGAGCGCTTC
GCCGAGGAGG TGCGCGAACT GGTGCCGGCC GGCAATGTCT ATGTGAACCG CTCGATCATC
GGCGCGGTGG TCGGCGTCCA GCCGTTCGGC GGGGAGGGGC TGTCGGGCAC CGGCCCGAAG
GCCGGCGGTC CGCACGCGCT GCTGCGCTAC GCGACCGAGC GGGCCTTGTC GGTGAACATC
ACCGCGCAGG GCGGCGACCC GGCCTTGCTC AACCTCTGA
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| Protein sequence | MASLLSNWDM IDAGKYADEG EVVRTLLERQ PLGPRDRADV VAEATALVEG ARGATKKQGV
VESFLQQFSL GTREGLALMC LAEALLRTPD ADTRDRLIAE KIGSADWASH LGQSDSLFVN
ASTWGLMLTG RLVDVDEEAK NDLGGFLKRI TARLGEPVIR QAVGAAVKMM GEQFVLGRTI
GDALARARRE GYLCSFDMLG EGARTAADAA RYEKIYADAI EAVGKAADGA GPELGHGVSV
KLSALSPRYE AVQEARVWEE LYPRVRRLAL IAARHDLNFA IDAEEADRLV ISLKMIERLV
KEPELGEWKG LGVVVQAYQK RGLTVIGALR ALAEGSGRRI MVRLVKGAYW DSEIKKAQVA
GRPDYPVFTT KAATDLSYLV CAKALIDASP ALYPQFASHN AHTLAAVRGM ADGAGVTIEH
QRLHGMGEAL YAAAGKRYGE LRLRAYAPVG GHEELLPYLV RRLLENGANT SFVHALLDER
VPAELVVADP IAAVEAHPRR HARIALPADI YGPSRRNPPG RDYSLVEARG LAAKTAVLTA
GERETSGAII RGRLIAAASD PVTSPADRGR VIGYASTATP ADIDRAIAAA RAAQPGWNRL
GGAGRAAVLR AMGDALEAEM DPLIALLSLE AGKTLNDGVA EVREAVDFCR YYADLAERQF
GAPTILPGPV GETNQLELAG RGVFACISPW NFPLAIFTGQ IAAALAAGNA VLAKPAEQTP
LVAARAVRLF HKAGLDPDLL ALLPGDGATV GGAIVNHPGI DGVAFTGGTE TAWAINRQLA
ARNGPIIPFI AETGGLNGMF VDTTALREQV VDDVVLSAFG SAGQRCSALR LLFVPHDSAD
ELVATLKGAM EALVIGDPAD PATDVGPVID AEAKAALAAH RERLSREAVI LHECAAPEGG
DFFAPLMAEI PAADYLEREV FGPILHIVRY DPADLAKVAG RLAARGYGLT LGVHSRIERF
AEEVRELVPA GNVYVNRSII GAVVGVQPFG GEGLSGTGPK AGGPHALLRY ATERALSVNI
TAQGGDPALL NL
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