| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1062 |
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| Symbol | |
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| ID | 5197268 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 1181778 |
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| End bp | 1183289 |
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| Gene Length | 1512 bp |
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| Protein Length | 503 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 640580607 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001261566 |
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| Protein GI | 148553984 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | [TIGR02466] conserved hypothetical protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 43 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0498001 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGATGG AGTTGCTGCA GGAGGCCGCC CGGCTGGCCC AGGGCCCCGA TCCGGAGGCG
GCGCGGCCGC TGGTCGCCCG GCTGCTGGCG GCGCATCCGG GCGACGCCGA CGTGCTGACG
GTCGCGGGGA TCGCGGCGCA GCGCAGCGGC GGTCTCGACG AGGCGCTCGG CCATTTCGCG
GCGGCGCTCG CGGCCGATCC CGACAATCCC GCGCGGCTCG GCAACCATGC CGTCGCGCTC
AAGCAGGCGG GCCGCTTCGA CGCGGCGATC GCCGCGCTCG AACGCGCGCT GGCGCTGCGC
CCCGGCGCGC CGGTCACGCT CGCCAATCTC GGCTCCTGCC TGATCGCGGC GGACCGGCCG
AAGGAGGCAG AGGCGCCGCT GCGCGCGGCG GTCGCGGCGA AGCCCGACCA TGTCGAGGCC
TGGAACAATC TGGGGGTGGC GCTGGCCCGC ACCGGCCGCG CCGCCGAGGC CGAGCAGGCC
TATGCCCGCG CGCTGGCGCT GCGCCCCGGC TATGCCGAGG CGGCGCTCAA CCGGGTCGAC
GCGCTCGACC GGCTGGGCCG GGGCACCGAG GCCGAGCGGA TCGCCGGCGC GGTGCTCGCC
AGCCTGCCCG GCCATCCGCG CGCCGCCAAC CAGCTCGCCG GGCTGCGCGA CCGTCGCGGC
GACCTGGCCG GCGCGATCGA CCTCTACCGC GCGGCGCTCG ACAAGGGCGG GCTCAACCAT
CCGATCGGCA TCAACCTCGC CATGGCGCTG CTGCGCGCGG GCGAGCCCGC CGAGGCGCTG
GCGCTGTGCG ACCGGCTGCT CGCCGCCTCG CCGAGCATCA CCACGCCGCT GGCTCTGAAA
TGCGCCGCGC TGGAGCGGCT CGGCGATACC GAAGCGCTCG CCGCGCTGAT GGCGCTGGAC
CGCTTCGTCG CGGCGATCGA CATCGATGCG GCGCCCGGCT TCGACGATCT CGACGCCTTC
CACGCCGCGC TCGCGGCCGA GCTCGCCGCC CATCCGTCGC TGACCTTCGA GCCCGAGGGC
CTCGTCACCC GCGCCGGGCG GCAGAGCGAC GAGCTGGCCG ATGCCGGCAC GCCCGCCATC
GCCGCGCTCG CCACGCTGGC GCGCGAGGCG CTCGCCCGTC ACGCGGCGGC GGTCGGCGAC
GAGGACCATG TCTGGCTGCG CGCCCGGCCC GAGCATGGGA CACTGACGCT GTGGGGCACG
ATCCTCAGCC CCGGCGGCGC GGTGGAGCCG CACATCCATG CGCCCAACTG GCTGTCGGGC
GTCTATTATC CGGCCTTCCC GGTCGAACTG GCGGAACCGC AGGAGGGCTG GTTCGCGATC
GGCGCGCTGC CCGACGTGCT GGGCGGCGGC GGCACCCGCC ACCTGCGCGA GCCGCGCCCC
GGCCGGATGA TCCTGTTCCC GTCCCATCTG TGGCATTGCA CCCTGCCCTT CGGCGGACGC
GAGCCGCGGA TCAGCTTCGC GTTCGACCTG GTGCCCGACG GCACCGGCCA GCCGCATCGC
CTGCGGCGCT GA
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| Protein sequence | MPMELLQEAA RLAQGPDPEA ARPLVARLLA AHPGDADVLT VAGIAAQRSG GLDEALGHFA
AALAADPDNP ARLGNHAVAL KQAGRFDAAI AALERALALR PGAPVTLANL GSCLIAADRP
KEAEAPLRAA VAAKPDHVEA WNNLGVALAR TGRAAEAEQA YARALALRPG YAEAALNRVD
ALDRLGRGTE AERIAGAVLA SLPGHPRAAN QLAGLRDRRG DLAGAIDLYR AALDKGGLNH
PIGINLAMAL LRAGEPAEAL ALCDRLLAAS PSITTPLALK CAALERLGDT EALAALMALD
RFVAAIDIDA APGFDDLDAF HAALAAELAA HPSLTFEPEG LVTRAGRQSD ELADAGTPAI
AALATLAREA LARHAAAVGD EDHVWLRARP EHGTLTLWGT ILSPGGAVEP HIHAPNWLSG
VYYPAFPVEL AEPQEGWFAI GALPDVLGGG GTRHLREPRP GRMILFPSHL WHCTLPFGGR
EPRISFAFDL VPDGTGQPHR LRR
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